Hb_000388_150

Information

Type -
Description -
Location Contig388: 220809-222956
Sequence    

Annotation

kegg
ID rcu:RCOM_0635750
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID KDP21180.1
description hypothetical protein JCGZ_21651 [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JMG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21651 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38926: 220830-222940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_150 0.0 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
2 Hb_000480_040 0.0890213437 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
3 Hb_006006_060 0.0905439327 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
4 Hb_174865_040 0.0920813581 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
5 Hb_010344_030 0.0976533556 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022693_130 0.0987706174 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_005062_060 0.0992435319 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
8 Hb_009020_040 0.1001372299 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
9 Hb_010172_010 0.1036350566 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
10 Hb_000107_250 0.1048322845 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
11 Hb_160271_010 0.1055028564 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
12 Hb_000200_350 0.1066687014 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
13 Hb_000108_020 0.107040217 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
14 Hb_004705_160 0.1099951288 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
15 Hb_001157_230 0.1109965327 - - Protein AFR, putative [Ricinus communis]
16 Hb_008705_020 0.1117407648 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
17 Hb_012573_050 0.1119338753 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
18 Hb_001301_270 0.1120123899 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
19 Hb_156850_100 0.1123610575 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
20 Hb_024184_010 0.1133490355 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000388_150 Hb_000388_150 Hb_000480_040 Hb_000480_040 Hb_000388_150--Hb_000480_040 Hb_006006_060 Hb_006006_060 Hb_000388_150--Hb_006006_060 Hb_174865_040 Hb_174865_040 Hb_000388_150--Hb_174865_040 Hb_010344_030 Hb_010344_030 Hb_000388_150--Hb_010344_030 Hb_022693_130 Hb_022693_130 Hb_000388_150--Hb_022693_130 Hb_005062_060 Hb_005062_060 Hb_000388_150--Hb_005062_060 Hb_000309_020 Hb_000309_020 Hb_000480_040--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_006006_060--Hb_022693_130 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_156850_100 Hb_156850_100 Hb_174865_040--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_174865_040--Hb_042083_040 Hb_160271_010 Hb_160271_010 Hb_174865_040--Hb_160271_010 Hb_174865_040--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_174865_040--Hb_073973_120 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_010344_030--Hb_000200_350 Hb_004735_020 Hb_004735_020 Hb_010344_030--Hb_004735_020 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060 Hb_022693_130--Hb_160271_010 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_002053_050 Hb_002053_050 Hb_005062_060--Hb_002053_050 Hb_005062_060--Hb_160271_010 Hb_005656_070 Hb_005656_070 Hb_005062_060--Hb_005656_070 Hb_005062_060--Hb_000107_250 Hb_000453_030 Hb_000453_030 Hb_005062_060--Hb_000453_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.85601 7.01653 19.6884 19.6388 8.39271 10.6802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.03436 4.36888 9.17942 6.82333 29.773

CAGE analysis