Hb_005250_010

Information

Type -
Description -
Location Contig5250: 8060-9700
Sequence    

Annotation

kegg
ID mus:103989705
description uncharacterized protein LOC103989705
nr
ID KDP31459.1
description hypothetical protein JCGZ_15339 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KHY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15339 PE=4 SV=1
Gene Ontology
ID GO:0008080
description phd finger transcription factor-like protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46968: 8234-48981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005250_010 0.0 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
2 Hb_013405_080 0.070147443 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
3 Hb_025477_050 0.0820132379 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_005914_040 0.083298678 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
5 Hb_004218_190 0.0857050309 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
6 Hb_026053_040 0.0872791554 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000033_110 0.0875942728 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
8 Hb_000320_470 0.0876018713 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_000300_470 0.0885474786 - - PREDICTED: nucleolin-like [Jatropha curcas]
10 Hb_000479_170 0.0887905984 - - chaperone clpb, putative [Ricinus communis]
11 Hb_002973_110 0.0918630873 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_022250_010 0.0920209912 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
13 Hb_000589_110 0.0921182215 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
14 Hb_010344_030 0.0926404953 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009178_060 0.0950776132 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000172_350 0.0954384283 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
17 Hb_002232_390 0.0973892255 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
18 Hb_003475_020 0.0985160204 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
19 Hb_022250_100 0.0999086662 - - calnexin, putative [Ricinus communis]
20 Hb_001472_160 0.1006200204 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]

Gene co-expression network

sample Hb_005250_010 Hb_005250_010 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_007769_040 Hb_007769_040 Hb_025477_050--Hb_007769_040 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_025477_050--Hb_000345_370 Hb_025477_050--Hb_001660_120 Hb_005571_010 Hb_005571_010 Hb_005914_040--Hb_005571_010 Hb_006846_080 Hb_006846_080 Hb_005914_040--Hb_006846_080 Hb_023988_030 Hb_023988_030 Hb_005914_040--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_004218_190--Hb_000300_470 Hb_000365_240 Hb_000365_240 Hb_004218_190--Hb_000365_240 Hb_000046_540 Hb_000046_540 Hb_004218_190--Hb_000046_540 Hb_007101_080 Hb_007101_080 Hb_004218_190--Hb_007101_080 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040 Hb_026053_040--Hb_000320_470 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_000181_100 Hb_000181_100 Hb_026053_040--Hb_000181_100 Hb_001008_070 Hb_001008_070 Hb_026053_040--Hb_001008_070 Hb_026053_040--Hb_000033_110 Hb_026053_040--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62082 4.43795 5.85696 6.54768 4.38228 5.05396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17546 2.46535 3.28823 4.35219 14.0938

CAGE analysis