Hb_001660_120

Information

Type -
Description -
Location Contig1660: 124598-128813
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10120g
description hypothetical protein
nr
ID XP_012079730.1
description PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FIJ7
description Adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=1 SV=1
trembl
ID A0A067KH95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14855 PE=3 SV=1
Gene Ontology
ID GO:0009570
description adenylate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15307: 124544-128795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_120 0.0 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
2 Hb_013405_080 0.054132632 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
3 Hb_001662_140 0.0706627647 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
4 Hb_000363_060 0.074607696 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_000331_130 0.0746363295 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
6 Hb_000221_140 0.0753639263 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_033312_010 0.0775583751 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_025477_050 0.0807571874 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_031284_070 0.0847721682 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
10 Hb_003038_200 0.0860461911 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
11 Hb_000144_060 0.0873070399 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000033_110 0.0883453074 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
13 Hb_031284_010 0.0897237579 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
14 Hb_003462_070 0.0908985665 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_114310_070 0.0913294707 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
16 Hb_003752_070 0.0921520131 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
17 Hb_002150_140 0.0926442101 - - PREDICTED: girdin-like [Jatropha curcas]
18 Hb_009775_010 0.0928966165 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
19 Hb_006538_120 0.0933517369 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
20 Hb_000300_470 0.0945482144 - - PREDICTED: nucleolin-like [Jatropha curcas]

Gene co-expression network

sample Hb_001660_120 Hb_001660_120 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_001662_140--Hb_000331_130 Hb_031284_010 Hb_031284_010 Hb_001662_140--Hb_031284_010 Hb_003038_200 Hb_003038_200 Hb_001662_140--Hb_003038_200 Hb_002233_130 Hb_002233_130 Hb_001662_140--Hb_002233_130 Hb_008059_010 Hb_008059_010 Hb_001662_140--Hb_008059_010 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_007035_040 Hb_007035_040 Hb_000331_130--Hb_007035_040 Hb_004884_180 Hb_004884_180 Hb_000331_130--Hb_004884_180 Hb_000331_130--Hb_002233_130 Hb_006538_120 Hb_006538_120 Hb_000221_140--Hb_006538_120 Hb_009775_010 Hb_009775_010 Hb_000221_140--Hb_009775_010 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_114310_070 Hb_114310_070 Hb_033312_010--Hb_114310_070 Hb_033312_010--Hb_013405_080 Hb_134849_010 Hb_134849_010 Hb_033312_010--Hb_134849_010 Hb_002774_190 Hb_002774_190 Hb_033312_010--Hb_002774_190 Hb_000032_500 Hb_000032_500 Hb_033312_010--Hb_000032_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.31487 6.85581 14.5902 7.29576 8.473 9.08712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8504 6.13074 4.91975 6.28303 21.4248

CAGE analysis