Hb_000331_130

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig331: 112582-122509
Sequence    

Annotation

kegg
ID rcu:RCOM_1506620
description hypothetical protein
nr
ID XP_002511207.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P54122
description Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=rnj PE=3 SV=2
trembl
ID B9RAI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506620 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ribonuclease j

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34762: 112676-114456 , PASA_asmbl_34763: 114567-115673 , PASA_asmbl_34764: 117927-122492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_130 0.0 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
2 Hb_001662_140 0.0693086024 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
3 Hb_001660_120 0.0746363295 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
4 Hb_007035_040 0.0802305248 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
5 Hb_004884_180 0.0882550827 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
6 Hb_000363_060 0.0896659901 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_002233_130 0.0960598647 - - transporter, putative [Ricinus communis]
8 Hb_008206_060 0.0963864588 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000245_150 0.0969540781 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
10 Hb_013405_080 0.0972090017 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
11 Hb_001377_040 0.1019638323 - - chitinase, putative [Ricinus communis]
12 Hb_000320_470 0.1024062774 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_010174_090 0.1028662835 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
14 Hb_031284_070 0.103272265 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
15 Hb_001828_120 0.1032930306 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
16 Hb_025477_050 0.1044409856 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_003038_200 0.1053548747 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
18 Hb_033312_010 0.1054314928 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_031284_010 0.1055230628 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
20 Hb_001158_160 0.105967168 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_130 Hb_000331_130 Hb_001662_140 Hb_001662_140 Hb_000331_130--Hb_001662_140 Hb_001660_120 Hb_001660_120 Hb_000331_130--Hb_001660_120 Hb_007035_040 Hb_007035_040 Hb_000331_130--Hb_007035_040 Hb_004884_180 Hb_004884_180 Hb_000331_130--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_000331_130--Hb_000363_060 Hb_002233_130 Hb_002233_130 Hb_000331_130--Hb_002233_130 Hb_001662_140--Hb_001660_120 Hb_031284_010 Hb_031284_010 Hb_001662_140--Hb_031284_010 Hb_003038_200 Hb_003038_200 Hb_001662_140--Hb_003038_200 Hb_001662_140--Hb_002233_130 Hb_008059_010 Hb_008059_010 Hb_001662_140--Hb_008059_010 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001660_120--Hb_000363_060 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_007035_040--Hb_002233_130 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_001472_160 Hb_001472_160 Hb_004884_180--Hb_001472_160 Hb_000220_210 Hb_000220_210 Hb_004884_180--Hb_000220_210 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_000771_170 Hb_000771_170 Hb_004884_180--Hb_000771_170 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_004225_040 Hb_004225_040 Hb_004884_180--Hb_004225_040 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_000363_060--Hb_031042_060 Hb_000363_060--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.39143 7.31245 12.262 3.93334 6.69479 7.0474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09578 3.86631 3.04306 6.31602 17.3521

CAGE analysis