Hb_010174_090

Information

Type -
Description -
Location Contig10174: 84346-90182
Sequence    

Annotation

kegg
ID rcu:RCOM_1082900
description hypothetical protein
nr
ID XP_012085558.1
description PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYL3
description ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3
trembl
ID A0A067K4M5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17877 PE=3 SV=1
Gene Ontology
ID GO:0016021
description albino3-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00841: 88550-89701 , PASA_asmbl_00843: 84288-90019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_090 0.0 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
2 Hb_000311_120 0.054641187 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
3 Hb_000613_120 0.0680666074 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_006787_090 0.068790863 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
5 Hb_003529_140 0.0721261986 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
6 Hb_006569_040 0.0762230348 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
7 Hb_000826_030 0.0774890643 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
8 Hb_003752_070 0.0818435035 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
9 Hb_005389_170 0.0818777906 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
10 Hb_031042_060 0.0847868679 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_004884_180 0.086253508 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
12 Hb_000532_100 0.0894711681 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
13 Hb_114310_070 0.0901123517 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
14 Hb_033312_010 0.0907664381 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000220_210 0.093584908 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
16 Hb_005162_110 0.0944081197 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
17 Hb_001660_120 0.0956512738 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
18 Hb_021650_010 0.095997186 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
19 Hb_000555_020 0.0963862391 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
20 Hb_000580_150 0.0998944398 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_010174_090 Hb_010174_090 Hb_000311_120 Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_006787_090 Hb_006787_090 Hb_010174_090--Hb_006787_090 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_000311_120--Hb_006787_090 Hb_000580_150 Hb_000580_150 Hb_000311_120--Hb_000580_150 Hb_000555_020 Hb_000555_020 Hb_000311_120--Hb_000555_020 Hb_033312_010 Hb_033312_010 Hb_000311_120--Hb_033312_010 Hb_000311_120--Hb_003529_140 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_000613_120--Hb_006787_090 Hb_004109_260 Hb_004109_260 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_003529_140--Hb_006569_040 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_003529_140--Hb_000555_020 Hb_007283_010 Hb_007283_010 Hb_006569_040--Hb_007283_010 Hb_006569_040--Hb_000826_030 Hb_000663_020 Hb_000663_020 Hb_006569_040--Hb_000663_020 Hb_006569_040--Hb_003752_070 Hb_001158_160 Hb_001158_160 Hb_000826_030--Hb_001158_160 Hb_002876_300 Hb_002876_300 Hb_000826_030--Hb_002876_300 Hb_030414_040 Hb_030414_040 Hb_000826_030--Hb_030414_040 Hb_012438_030 Hb_012438_030 Hb_000826_030--Hb_012438_030 Hb_000364_100 Hb_000364_100 Hb_000826_030--Hb_000364_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8692 16.743 43.9377 13.0153 17.9197 12.0021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0168 13.5911 7.79042 14.658 43.5567

CAGE analysis