Hb_001828_120

Information

Type -
Description -
Location Contig1828: 132980-138152
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36350g
description POPTRDRAFT_797910; hypothetical protein
nr
ID XP_011045188.1
description PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067LCX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10171 PE=4 SV=1
Gene Ontology
ID GO:0016021
description dna-binding storekeeper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17818: 137274-137989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_120 0.0 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
2 Hb_003529_140 0.0782181008 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
3 Hb_000771_170 0.0857711547 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_005883_020 0.086086575 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
5 Hb_002600_070 0.0888154907 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
6 Hb_007192_090 0.0896471936 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
7 Hb_002249_030 0.0987469729 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
8 Hb_001472_160 0.0997168267 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_000331_130 0.1032930306 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
10 Hb_006569_040 0.1036067183 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
11 Hb_001377_040 0.1070393291 - - chitinase, putative [Ricinus communis]
12 Hb_000555_020 0.1079667027 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
13 Hb_001277_340 0.1095626547 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_000245_150 0.1100166725 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
15 Hb_000363_060 0.1120558944 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_000011_240 0.1134733571 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
17 Hb_003929_220 0.1148146891 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_010174_090 0.1166473827 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
19 Hb_002973_110 0.1172393271 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_004884_180 0.118280079 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001828_120 Hb_001828_120 Hb_003529_140 Hb_003529_140 Hb_001828_120--Hb_003529_140 Hb_000771_170 Hb_000771_170 Hb_001828_120--Hb_000771_170 Hb_005883_020 Hb_005883_020 Hb_001828_120--Hb_005883_020 Hb_002600_070 Hb_002600_070 Hb_001828_120--Hb_002600_070 Hb_007192_090 Hb_007192_090 Hb_001828_120--Hb_007192_090 Hb_002249_030 Hb_002249_030 Hb_001828_120--Hb_002249_030 Hb_006569_040 Hb_006569_040 Hb_003529_140--Hb_006569_040 Hb_010174_090 Hb_010174_090 Hb_003529_140--Hb_010174_090 Hb_003529_140--Hb_002600_070 Hb_000555_020 Hb_000555_020 Hb_003529_140--Hb_000555_020 Hb_000311_120 Hb_000311_120 Hb_003529_140--Hb_000311_120 Hb_000771_170--Hb_002600_070 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_001472_160 Hb_001472_160 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_003900_030 Hb_003900_030 Hb_005883_020--Hb_003900_030 Hb_000358_140 Hb_000358_140 Hb_005883_020--Hb_000358_140 Hb_005883_020--Hb_007192_090 Hb_004254_100 Hb_004254_100 Hb_005883_020--Hb_004254_100 Hb_002233_130 Hb_002233_130 Hb_005883_020--Hb_002233_130 Hb_000748_090 Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_007192_090--Hb_001472_160 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_000404_030 Hb_000404_030 Hb_002249_030--Hb_000404_030 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_001178_030 Hb_001178_030 Hb_002249_030--Hb_001178_030 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002249_030--Hb_002600_070 Hb_002249_030--Hb_000771_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01247 1.58673 1.97455 0.699565 0.833801 0.68351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.529674 0.441221 0.414515 0.62618 2.82069

CAGE analysis