Hb_007192_090

Information

Type -
Description -
Location Contig7192: 52444-53907
Sequence    

Annotation

kegg
ID gmx:100791320
description elongation factor Tu, chloroplastic-like
nr
ID XP_003525588.1
description PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
swissprot
ID P46280
description Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1
trembl
ID K7KMT9
description Elongation factor Tu OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005730
description elongation factor chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55550: 52279-54169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007192_090 0.0 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
2 Hb_001472_160 0.084321281 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
3 Hb_001828_120 0.0896471936 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
4 Hb_007769_040 0.0929983453 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_002973_110 0.095495295 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_025477_050 0.0976914372 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000589_110 0.0983223036 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
8 Hb_005883_020 0.1024161343 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
9 Hb_000479_170 0.1063064192 - - chaperone clpb, putative [Ricinus communis]
10 Hb_002600_070 0.1071642626 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
11 Hb_000771_170 0.1073874807 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_005211_020 0.1092796408 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
13 Hb_003734_080 0.1115579775 - - myosin vIII, putative [Ricinus communis]
14 Hb_003929_220 0.1140959371 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001408_030 0.1149619979 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
16 Hb_001437_120 0.1150832368 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
17 Hb_002942_130 0.115893059 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
18 Hb_000031_230 0.1178272308 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
19 Hb_003529_140 0.1193829417 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
20 Hb_015778_060 0.1194686351 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]

Gene co-expression network

sample Hb_007192_090 Hb_007192_090 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_001472_160--Hb_025477_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_001472_160--Hb_002973_110 Hb_003529_140 Hb_003529_140 Hb_001828_120--Hb_003529_140 Hb_000771_170 Hb_000771_170 Hb_001828_120--Hb_000771_170 Hb_005883_020 Hb_005883_020 Hb_001828_120--Hb_005883_020 Hb_002600_070 Hb_002600_070 Hb_001828_120--Hb_002600_070 Hb_002249_030 Hb_002249_030 Hb_001828_120--Hb_002249_030 Hb_007769_040--Hb_025477_050 Hb_007769_040--Hb_000589_110 Hb_000345_370 Hb_000345_370 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_013405_080 Hb_013405_080 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_002973_110--Hb_002600_070 Hb_025477_050--Hb_013405_080 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120 Hb_000589_110--Hb_013405_080 Hb_005250_010 Hb_005250_010 Hb_000589_110--Hb_005250_010 Hb_000589_110--Hb_025477_050 Hb_000555_020 Hb_000555_020 Hb_000589_110--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5473 39.7291 37.3033 25.353 25.606 21.1062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0437 11.9763 9.43773 14.881 88.6585

CAGE analysis