Hb_002249_030

Information

Type -
Description -
Location Contig2249: 17442-24075
Sequence    

Annotation

kegg
ID rcu:RCOM_1504150
description ATP-dependent clp protease, putative
nr
ID XP_012090602.1
description PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
swissprot
ID P35100
description Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JSN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26380 PE=3 SV=1
Gene Ontology
ID GO:0005524
description chaperone protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23389: 16920-24067 , PASA_asmbl_23390: 18641-18814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_030 0.0 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
2 Hb_000404_030 0.0692966805 - - PREDICTED: protein NAP1 [Jatropha curcas]
3 Hb_011616_040 0.0834437112 - - glucan water dikinase 3, partial [Manihot esculenta]
4 Hb_001178_030 0.0837386178 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
5 Hb_000008_280 0.0850507653 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_002600_070 0.0875717596 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
7 Hb_000771_170 0.0876185493 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_000586_020 0.088337101 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
9 Hb_008642_060 0.0955337317 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
10 Hb_002078_470 0.0966949349 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
11 Hb_004994_350 0.0983305836 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
12 Hb_001828_120 0.0987469729 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
13 Hb_001277_340 0.1001125892 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_005305_130 0.1009395599 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
15 Hb_000030_140 0.1020768166 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_000806_030 0.104818805 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
17 Hb_009158_060 0.1061301254 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
18 Hb_005183_140 0.1073232431 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
19 Hb_002411_190 0.1081211836 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_004837_020 0.1086766908 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_030 Hb_002249_030 Hb_000404_030 Hb_000404_030 Hb_002249_030--Hb_000404_030 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_001178_030 Hb_001178_030 Hb_002249_030--Hb_001178_030 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_000586_020 Hb_000586_020 Hb_000404_030--Hb_000586_020 Hb_002078_470 Hb_002078_470 Hb_000404_030--Hb_002078_470 Hb_000404_030--Hb_001178_030 Hb_009158_060 Hb_009158_060 Hb_000404_030--Hb_009158_060 Hb_013358_060 Hb_013358_060 Hb_000404_030--Hb_013358_060 Hb_011616_040--Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_011616_040--Hb_008642_060 Hb_001054_120 Hb_001054_120 Hb_011616_040--Hb_001054_120 Hb_001269_050 Hb_001269_050 Hb_011616_040--Hb_001269_050 Hb_011457_140 Hb_011457_140 Hb_011616_040--Hb_011457_140 Hb_111552_010 Hb_111552_010 Hb_001178_030--Hb_111552_010 Hb_001178_030--Hb_000586_020 Hb_005305_130 Hb_005305_130 Hb_001178_030--Hb_005305_130 Hb_000806_030 Hb_000806_030 Hb_001178_030--Hb_000806_030 Hb_000008_280--Hb_008642_060 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000358_220 Hb_000358_220 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_000008_280--Hb_011457_140 Hb_000748_090 Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_000482_050 Hb_000482_050 Hb_002600_070--Hb_000482_050 Hb_002600_070--Hb_009158_060 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_001472_160 Hb_001472_160 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000771_170--Hb_000482_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.0981 114.531 104.647 50.3925 33.0802 39.6439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.951 17.3485 28.5461 52.0823 142.429

CAGE analysis