Hb_000586_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig586: 18063-19041
Sequence    

Annotation

kegg
ID cic:CICLE_v10003564mg
description hypothetical protein
nr
ID KHG22384.1
description hypothetical protein F383_02497 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0PD73
description Uncharacterized protein OS=Gossypium arboreum GN=F383_02497 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000586_020 0.0 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
2 Hb_000404_030 0.0559822674 - - PREDICTED: protein NAP1 [Jatropha curcas]
3 Hb_001178_030 0.0786158578 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
4 Hb_004774_090 0.0850842094 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
5 Hb_111552_010 0.0863484263 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
6 Hb_002249_030 0.088337101 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
7 Hb_068804_090 0.0884728389 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
8 Hb_000748_090 0.0992535255 - - glucose inhibited division protein A, putative [Ricinus communis]
9 Hb_009158_060 0.1014122528 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
10 Hb_005305_130 0.1036013536 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
11 Hb_000452_030 0.1046644872 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
12 Hb_000673_010 0.1051221861 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
13 Hb_002600_070 0.10902693 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
14 Hb_004994_350 0.1091722042 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
15 Hb_022378_010 0.1094110533 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
16 Hb_001396_020 0.1122432032 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_000243_120 0.1142809354 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
18 Hb_002783_190 0.1143740591 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
19 Hb_004629_030 0.1145628399 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000663_080 0.114598871 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000586_020 Hb_000586_020 Hb_000404_030 Hb_000404_030 Hb_000586_020--Hb_000404_030 Hb_001178_030 Hb_001178_030 Hb_000586_020--Hb_001178_030 Hb_004774_090 Hb_004774_090 Hb_000586_020--Hb_004774_090 Hb_111552_010 Hb_111552_010 Hb_000586_020--Hb_111552_010 Hb_002249_030 Hb_002249_030 Hb_000586_020--Hb_002249_030 Hb_068804_090 Hb_068804_090 Hb_000586_020--Hb_068804_090 Hb_000404_030--Hb_002249_030 Hb_002078_470 Hb_002078_470 Hb_000404_030--Hb_002078_470 Hb_000404_030--Hb_001178_030 Hb_009158_060 Hb_009158_060 Hb_000404_030--Hb_009158_060 Hb_013358_060 Hb_013358_060 Hb_000404_030--Hb_013358_060 Hb_001178_030--Hb_111552_010 Hb_005305_130 Hb_005305_130 Hb_001178_030--Hb_005305_130 Hb_000806_030 Hb_000806_030 Hb_001178_030--Hb_000806_030 Hb_001178_030--Hb_002249_030 Hb_004774_090--Hb_111552_010 Hb_004324_360 Hb_004324_360 Hb_004774_090--Hb_004324_360 Hb_000956_040 Hb_000956_040 Hb_004774_090--Hb_000956_040 Hb_000975_210 Hb_000975_210 Hb_004774_090--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004774_090--Hb_000788_030 Hb_000137_010 Hb_000137_010 Hb_004774_090--Hb_000137_010 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_111552_010--Hb_000956_040 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_000748_090 Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_068804_090--Hb_007012_030 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7551 66.3911 83.4922 38.2648 18.9878 22.178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.447 16.4994 32.3232 37.4334 89.425

CAGE analysis