Hb_011616_040

Information

Type -
Description -
Location Contig11616: 28628-44636
Sequence    

Annotation

kegg
ID rcu:RCOM_1305250
description chloroplast alpha-glucan water dikinase, putative (EC:2.7.9.5)
nr
ID AFO83531.1
description glucan water dikinase 3, partial [Manihot esculenta]
swissprot
ID Q6ZY51
description Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1
trembl
ID V9K775
description Glucan water dikinase 3 (Fragment) OS=Manihot esculenta GN=GWD3 PE=2 SV=1
Gene Ontology
ID GO:0009570
description water chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04981: 17134-84324 , PASA_asmbl_04984: 21736-63899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011616_040 0.0 - - glucan water dikinase 3, partial [Manihot esculenta]
2 Hb_002249_030 0.0834437112 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
3 Hb_000008_280 0.1032504454 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
4 Hb_008642_060 0.1039522125 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_001054_120 0.1076009902 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
6 Hb_001269_050 0.1090201129 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
7 Hb_011457_140 0.1091257146 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
8 Hb_002809_160 0.1097262639 - - PREDICTED: protein FAM63A [Jatropha curcas]
9 Hb_013405_180 0.114680043 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
10 Hb_005885_030 0.1162551608 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_002942_130 0.1165712604 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
12 Hb_003734_080 0.1173999454 - - myosin vIII, putative [Ricinus communis]
13 Hb_000320_360 0.1179226374 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
14 Hb_004254_100 0.1183480926 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
15 Hb_000771_170 0.1210845283 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000030_140 0.1226958637 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
17 Hb_000358_220 0.1230420539 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
18 Hb_011202_030 0.1231852143 - - arsenite-resistance protein, putative [Ricinus communis]
19 Hb_001277_340 0.1232866582 - - aldo/keto reductase, putative [Ricinus communis]
20 Hb_002918_320 0.1243484184 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011616_040 Hb_011616_040 Hb_002249_030 Hb_002249_030 Hb_011616_040--Hb_002249_030 Hb_000008_280 Hb_000008_280 Hb_011616_040--Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_011616_040--Hb_008642_060 Hb_001054_120 Hb_001054_120 Hb_011616_040--Hb_001054_120 Hb_001269_050 Hb_001269_050 Hb_011616_040--Hb_001269_050 Hb_011457_140 Hb_011457_140 Hb_011616_040--Hb_011457_140 Hb_000404_030 Hb_000404_030 Hb_002249_030--Hb_000404_030 Hb_001178_030 Hb_001178_030 Hb_002249_030--Hb_001178_030 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_000008_280--Hb_008642_060 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000358_220 Hb_000358_220 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_000008_280--Hb_011457_140 Hb_008642_060--Hb_011457_140 Hb_008642_060--Hb_000358_220 Hb_003929_210 Hb_003929_210 Hb_008642_060--Hb_003929_210 Hb_008642_060--Hb_000179_190 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_000367_020 Hb_000367_020 Hb_001054_120--Hb_000367_020 Hb_015183_080 Hb_015183_080 Hb_001054_120--Hb_015183_080 Hb_001054_120--Hb_000358_220 Hb_003895_040 Hb_003895_040 Hb_001054_120--Hb_003895_040 Hb_000003_410 Hb_000003_410 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120 Hb_000492_080 Hb_000492_080 Hb_001269_050--Hb_000492_080 Hb_014720_030 Hb_014720_030 Hb_001269_050--Hb_014720_030 Hb_001998_220 Hb_001998_220 Hb_001269_050--Hb_001998_220 Hb_001269_050--Hb_013405_180 Hb_001269_050--Hb_001054_120 Hb_011457_140--Hb_000358_220 Hb_011457_140--Hb_000300_030 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.76454 25.5194 18.9096 11.6558 8.3456 10.2902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77993 1.46819 3.46006 11.363 26.8542

CAGE analysis