Hb_003895_040

Information

Type -
Description -
Location Contig3895: 84344-110466
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G1776000
description hypothetical protein
nr
ID KDO50187.1
description hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067E582
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0006512mg PE=4 SV=1
Gene Ontology
ID GO:0005085
description dedicator of cytokinesis protein 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39039: 58084-110394 , PASA_asmbl_39043: 89727-90097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003895_040 0.0 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
2 Hb_014497_020 0.0669059705 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
3 Hb_001054_120 0.0892433779 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
4 Hb_000512_030 0.0906992506 - - wall-associated kinase, putative [Ricinus communis]
5 Hb_007576_210 0.0949471976 - - PREDICTED: protein furry homolog [Jatropha curcas]
6 Hb_001124_050 0.0957073181 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
7 Hb_007120_060 0.096871019 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
8 Hb_002521_020 0.1001001169 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
9 Hb_015183_080 0.1005125791 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_000003_410 0.1016127391 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
11 Hb_000574_530 0.1017575825 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
12 Hb_011609_150 0.1074035377 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
13 Hb_003211_040 0.1085539083 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
14 Hb_009486_170 0.1097120908 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
15 Hb_001133_030 0.1098886114 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
16 Hb_000105_030 0.1118381687 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
17 Hb_001662_180 0.1120008556 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
18 Hb_007632_010 0.1127774422 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
19 Hb_000175_120 0.1130205012 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
20 Hb_122273_020 0.1150358696 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]

Gene co-expression network

sample Hb_003895_040 Hb_003895_040 Hb_014497_020 Hb_014497_020 Hb_003895_040--Hb_014497_020 Hb_001054_120 Hb_001054_120 Hb_003895_040--Hb_001054_120 Hb_000512_030 Hb_000512_030 Hb_003895_040--Hb_000512_030 Hb_007576_210 Hb_007576_210 Hb_003895_040--Hb_007576_210 Hb_001124_050 Hb_001124_050 Hb_003895_040--Hb_001124_050 Hb_007120_060 Hb_007120_060 Hb_003895_040--Hb_007120_060 Hb_014497_020--Hb_007576_210 Hb_014497_020--Hb_001124_050 Hb_003211_040 Hb_003211_040 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_009486_170 Hb_009486_170 Hb_014497_020--Hb_009486_170 Hb_000367_020 Hb_000367_020 Hb_001054_120--Hb_000367_020 Hb_015183_080 Hb_015183_080 Hb_001054_120--Hb_015183_080 Hb_000358_220 Hb_000358_220 Hb_001054_120--Hb_000358_220 Hb_000003_410 Hb_000003_410 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120 Hb_002027_190 Hb_002027_190 Hb_000512_030--Hb_002027_190 Hb_000679_210 Hb_000679_210 Hb_000512_030--Hb_000679_210 Hb_000571_160 Hb_000571_160 Hb_000512_030--Hb_000571_160 Hb_000512_030--Hb_014497_020 Hb_000631_110 Hb_000631_110 Hb_000512_030--Hb_000631_110 Hb_007576_210--Hb_009486_170 Hb_001699_280 Hb_001699_280 Hb_007576_210--Hb_001699_280 Hb_007632_010 Hb_007632_010 Hb_007576_210--Hb_007632_010 Hb_002333_050 Hb_002333_050 Hb_007576_210--Hb_002333_050 Hb_007576_210--Hb_003211_040 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_001726_100 Hb_001726_100 Hb_007120_060--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_007120_060--Hb_000925_090 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_007120_060--Hb_000003_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65534 11.4258 3.9142 5.65629 6.07604 5.65834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55926 0.746895 4.10678 9.50583 11.1904

CAGE analysis