Hb_000631_110

Information

Type -
Description -
Location Contig631: 122598-151846
Sequence    

Annotation

kegg
ID rcu:RCOM_1469910
description activating signal cointegrator 1 complex subunit 3, helc1, putative
nr
ID XP_012080368.1
description PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
swissprot
ID E1BNG3
description Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1
trembl
ID A0A067K536
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11712 PE=4 SV=1
Gene Ontology
ID GO:0019013
description activating signal cointegrator 1 complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51830: 122650-133276 , PASA_asmbl_51831: 122931-123187 , PASA_asmbl_51832: 134673-137926 , PASA_asmbl_51833: 134695-135922 , PASA_asmbl_51834: 137935-143653 , PASA_asmbl_51835: 137935-143644 , PASA_asmbl_51836: 143655-169062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000631_110 0.0 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
2 Hb_000940_150 0.0568521109 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
3 Hb_000175_120 0.0712992196 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
4 Hb_000083_270 0.0797507599 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
5 Hb_000105_030 0.0889761071 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
6 Hb_002005_080 0.0904654314 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
7 Hb_185830_070 0.0918353539 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
8 Hb_000022_170 0.0986690136 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
9 Hb_000574_530 0.1003120151 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
10 Hb_001662_180 0.1048578266 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
11 Hb_014497_020 0.1068580435 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
12 Hb_000512_030 0.1085648107 - - wall-associated kinase, putative [Ricinus communis]
13 Hb_000950_060 0.1122782969 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
14 Hb_009486_090 0.1183251352 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000661_260 0.1196271164 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
16 Hb_007632_010 0.1203810365 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
17 Hb_003498_130 0.1209438191 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
18 Hb_003211_040 0.1211224187 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
19 Hb_002631_200 0.1218832972 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
20 Hb_007576_210 0.1222408826 - - PREDICTED: protein furry homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000631_110 Hb_000631_110 Hb_000940_150 Hb_000940_150 Hb_000631_110--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_000631_110--Hb_000175_120 Hb_000083_270 Hb_000083_270 Hb_000631_110--Hb_000083_270 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_002005_080 Hb_002005_080 Hb_000631_110--Hb_002005_080 Hb_185830_070 Hb_185830_070 Hb_000631_110--Hb_185830_070 Hb_000940_150--Hb_185830_070 Hb_000940_150--Hb_000175_120 Hb_000022_170 Hb_000022_170 Hb_000940_150--Hb_000022_170 Hb_004218_250 Hb_004218_250 Hb_000940_150--Hb_004218_250 Hb_000574_530 Hb_000574_530 Hb_000940_150--Hb_000574_530 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_001699_280 Hb_001699_280 Hb_000083_270--Hb_001699_280 Hb_000340_490 Hb_000340_490 Hb_000083_270--Hb_000340_490 Hb_000083_270--Hb_002005_080 Hb_004705_020 Hb_004705_020 Hb_000083_270--Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_000083_270--Hb_001628_070 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000105_030--Hb_000175_120 Hb_008948_160 Hb_008948_160 Hb_000105_030--Hb_008948_160 Hb_000684_290 Hb_000684_290 Hb_002005_080--Hb_000684_290 Hb_001006_340 Hb_001006_340 Hb_002005_080--Hb_001006_340 Hb_041327_010 Hb_041327_010 Hb_002005_080--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_002005_080--Hb_002639_080 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130 Hb_002027_190 Hb_002027_190 Hb_185830_070--Hb_002027_190 Hb_185830_070--Hb_000574_530 Hb_185830_070--Hb_004218_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26038 12.3599 2.87782 4.21034 4.906 7.17258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10657 1.60744 5.14914 15.6228 8.87798

CAGE analysis