Hb_011609_150

Information

Type -
Description -
Location Contig11609: 142487-163239
Sequence    

Annotation

kegg
ID cit:102616027
description HEAT repeat-containing protein 5B-like
nr
ID XP_012077955.1
description PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
swissprot
ID A1A5F2
description HEAT repeat-containing protein 5B OS=Xenopus tropicalis GN=heatr5b PE=2 SV=1
trembl
ID A0A061EHX6
description HEAT repeat-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019487 PE=4 SV=1
Gene Ontology
ID GO:0005488
description heat repeat-containing protein 5b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04964: 127240-142713 , PASA_asmbl_04965: 142737-145095 , PASA_asmbl_04966: 145586-149757 , PASA_asmbl_04967: 150314-151680 , PASA_asmbl_04968: 155166-161016 , PASA_asmbl_04969: 155631-161016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_150 0.0 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
2 Hb_003119_080 0.0610360007 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
3 Hb_003211_040 0.0796816 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
4 Hb_007120_060 0.0847619372 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
5 Hb_000086_690 0.0851901213 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
6 Hb_014497_020 0.0872950952 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
7 Hb_002095_070 0.0901238353 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
8 Hb_002636_110 0.0947379073 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
9 Hb_000714_040 0.0948818387 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
10 Hb_002909_120 0.0982024868 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
11 Hb_007576_210 0.0990875536 - - PREDICTED: protein furry homolog [Jatropha curcas]
12 Hb_001133_030 0.1004922865 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
13 Hb_001401_060 0.1014604681 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
14 Hb_000406_020 0.1020235159 - - -
15 Hb_000105_030 0.1022140304 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
16 Hb_099270_030 0.1039139015 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
17 Hb_065408_010 0.104820747 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
18 Hb_009486_170 0.1054033621 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
19 Hb_001085_030 0.1066449505 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
20 Hb_000925_090 0.1071702042 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011609_150 Hb_011609_150 Hb_003119_080 Hb_003119_080 Hb_011609_150--Hb_003119_080 Hb_003211_040 Hb_003211_040 Hb_011609_150--Hb_003211_040 Hb_007120_060 Hb_007120_060 Hb_011609_150--Hb_007120_060 Hb_000086_690 Hb_000086_690 Hb_011609_150--Hb_000086_690 Hb_014497_020 Hb_014497_020 Hb_011609_150--Hb_014497_020 Hb_002095_070 Hb_002095_070 Hb_011609_150--Hb_002095_070 Hb_002909_120 Hb_002909_120 Hb_003119_080--Hb_002909_120 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_003119_080--Hb_000086_690 Hb_003119_080--Hb_003211_040 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_007576_210 Hb_007576_210 Hb_003211_040--Hb_007576_210 Hb_003211_040--Hb_002095_070 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_001726_100 Hb_001726_100 Hb_007120_060--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_000086_690--Hb_009486_170 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_001401_060 Hb_001401_060 Hb_000086_690--Hb_001401_060 Hb_011202_020 Hb_011202_020 Hb_000086_690--Hb_011202_020 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_001124_050 Hb_001124_050 Hb_014497_020--Hb_001124_050 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_014497_020--Hb_009486_170 Hb_000261_150 Hb_000261_150 Hb_002095_070--Hb_000261_150 Hb_000083_070 Hb_000083_070 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_003805_050 Hb_003805_050 Hb_002095_070--Hb_003805_050 Hb_002095_070--Hb_001085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13411 4.44621 1.47275 1.4039 3.43784 3.20395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.930054 0.521489 1.70294 4.32432 5.13184

CAGE analysis