Hb_002095_070

Information

Type -
Description -
Location Contig2095: 141315-146364
Sequence    

Annotation

kegg
ID rcu:RCOM_1602810
description ATP-dependent RNA helicase, putative
nr
ID XP_012073505.1
description PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
swissprot
ID Q38953
description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
trembl
ID A0A067KY08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07990 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable pre-mrna-splicing factor atp-dependent rna helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002095_070 0.0 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
2 Hb_000261_150 0.0726735433 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003211_040 0.0727350223 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
4 Hb_000083_070 0.0791822598 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
5 Hb_000836_020 0.0827162944 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
6 Hb_003805_050 0.0831528315 - - -
7 Hb_001085_030 0.0842563393 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
8 Hb_001699_280 0.0851080889 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
9 Hb_001662_180 0.0852547859 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
10 Hb_000061_510 0.0861307042 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
11 Hb_000015_050 0.0862037078 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
12 Hb_000703_130 0.08696426 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
13 Hb_188063_010 0.0873590055 - - hypothetical protein RCOM_1469330 [Ricinus communis]
14 Hb_000949_010 0.0875262507 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
15 Hb_001133_030 0.0876435326 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
16 Hb_000665_230 0.0878142004 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
17 Hb_002909_120 0.0879240323 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
18 Hb_002174_030 0.0879600775 - - transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_000003_410 0.0888588444 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
20 Hb_024185_010 0.0888682677 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002095_070 Hb_002095_070 Hb_000261_150 Hb_000261_150 Hb_002095_070--Hb_000261_150 Hb_003211_040 Hb_003211_040 Hb_002095_070--Hb_003211_040 Hb_000083_070 Hb_000083_070 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_003805_050 Hb_003805_050 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030 Hb_001699_280 Hb_001699_280 Hb_000261_150--Hb_001699_280 Hb_188063_010 Hb_188063_010 Hb_000261_150--Hb_188063_010 Hb_000261_150--Hb_000083_070 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000025_710 Hb_000025_710 Hb_000261_150--Hb_000025_710 Hb_007576_210 Hb_007576_210 Hb_003211_040--Hb_007576_210 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_000083_070--Hb_003805_050 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_000836_020--Hb_188063_010 Hb_005348_010 Hb_005348_010 Hb_003805_050--Hb_005348_010 Hb_000329_750 Hb_000329_750 Hb_003805_050--Hb_000329_750 Hb_024185_010 Hb_024185_010 Hb_003805_050--Hb_024185_010 Hb_006295_020 Hb_006295_020 Hb_003805_050--Hb_006295_020 Hb_001085_030--Hb_001133_030 Hb_001085_030--Hb_000261_150 Hb_001085_030--Hb_000925_090 Hb_001085_030--Hb_000083_070 Hb_007120_060 Hb_007120_060 Hb_001085_030--Hb_007120_060 Hb_014497_020 Hb_014497_020 Hb_001085_030--Hb_014497_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44701 7.27651 2.22792 1.64892 3.41644 4.10264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57753 1.14215 2.6078 4.67073 5.18089

CAGE analysis