Hb_002909_120

Information

Type -
Description -
Location Contig2909: 67422-81393
Sequence    

Annotation

kegg
ID rcu:RCOM_1700760
description suppressor of ty, putative
nr
ID XP_012081949.1
description PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
swissprot
ID Q7KZ85
description Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2
trembl
ID A0A067KCB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19328 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcription elongation factor spt6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30482: 67446-81340
cDNA
(Sanger)
(ID:Location)		 007_I05.ab1: 80129-81340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_120 0.0 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
2 Hb_002333_050 0.0489331338 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
3 Hb_000046_190 0.0558659776 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
4 Hb_003119_080 0.0593589201 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
5 Hb_009486_170 0.0653229552 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
6 Hb_188063_010 0.0661403463 - - hypothetical protein RCOM_1469330 [Ricinus communis]
7 Hb_001133_030 0.0671906842 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
8 Hb_005488_170 0.0701659295 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
9 Hb_002521_020 0.0737281475 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
10 Hb_000083_070 0.0738140131 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
11 Hb_012244_020 0.0741059027 - - calpain, putative [Ricinus communis]
12 Hb_000665_230 0.0741326283 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_005186_040 0.0742391399 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_000261_150 0.0747603717 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003211_040 0.0752380644 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
16 Hb_011689_030 0.0763026806 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
17 Hb_005348_010 0.076557526 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000025_710 0.0783268741 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
19 Hb_007632_010 0.0783969138 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_000412_010 0.0816882847 - - hect ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002909_120 Hb_002909_120 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030 Hb_002333_050--Hb_188063_010 Hb_002333_050--Hb_009486_170 Hb_000025_710 Hb_000025_710 Hb_002333_050--Hb_000025_710 Hb_001699_280 Hb_001699_280 Hb_002333_050--Hb_001699_280 Hb_000665_230 Hb_000665_230 Hb_002333_050--Hb_000665_230 Hb_009767_080 Hb_009767_080 Hb_000046_190--Hb_009767_080 Hb_000046_190--Hb_003119_080 Hb_019430_020 Hb_019430_020 Hb_000046_190--Hb_019430_020 Hb_005488_170 Hb_005488_170 Hb_000046_190--Hb_005488_170 Hb_005348_010 Hb_005348_010 Hb_000046_190--Hb_005348_010 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_000086_690 Hb_000086_690 Hb_003119_080--Hb_000086_690 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_009486_170--Hb_001133_030 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_009486_170--Hb_000086_690 Hb_188063_010--Hb_000025_710 Hb_188063_010--Hb_001699_280 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6005 41.7287 12.3323 18.4172 31.5883 25.3961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4557 11.4865 19.2643 30.6184 43.7022

CAGE analysis