Hb_003805_040

Information

Type -
Description -
Location Contig3805: 73941-81807
Sequence    

Annotation

kegg
ID dosa:Os04t0675200-01
description Os04g0675200; Similar to H0103C06.6 protein.
nr
ID KHM99056.1
description Sacsin [Glycine soja]
swissprot
ID Q13489
description Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens GN=BIRC3 PE=1 SV=2
trembl
ID A0A0B2NU73
description Sacsin OS=Glycine soja GN=glysoja_024356 PE=4 SV=1
Gene Ontology
ID GO:0009506
description low quality protein: sacsin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38577: 73949-76544 , PASA_asmbl_38578: 76664-79200 , PASA_asmbl_38581: 81325-99047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003805_040 0.0 - - Sacsin [Glycine soja]
2 Hb_009486_170 0.0480771028 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
3 Hb_000665_230 0.051851789 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
4 Hb_001133_030 0.0612976574 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
5 Hb_008053_040 0.06371749 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
6 Hb_011202_020 0.0669463118 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
7 Hb_002521_020 0.068965443 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
8 Hb_001951_170 0.0695481005 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_002007_110 0.0697837674 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
10 Hb_011242_060 0.0701061234 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
11 Hb_011689_030 0.0712310688 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
12 Hb_000066_150 0.0716095128 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_002333_050 0.0727043239 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
14 Hb_133702_020 0.0748077536 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000086_690 0.0754773647 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
16 Hb_005563_060 0.0759561011 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
17 Hb_001188_020 0.0764147654 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
18 Hb_003581_170 0.0767484713 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
19 Hb_003216_090 0.0777448475 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
20 Hb_043362_010 0.0785618789 - - hypothetical protein JCGZ_23765 [Jatropha curcas]

Gene co-expression network

sample Hb_003805_040 Hb_003805_040 Hb_009486_170 Hb_009486_170 Hb_003805_040--Hb_009486_170 Hb_000665_230 Hb_000665_230 Hb_003805_040--Hb_000665_230 Hb_001133_030 Hb_001133_030 Hb_003805_040--Hb_001133_030 Hb_008053_040 Hb_008053_040 Hb_003805_040--Hb_008053_040 Hb_011202_020 Hb_011202_020 Hb_003805_040--Hb_011202_020 Hb_002521_020 Hb_002521_020 Hb_003805_040--Hb_002521_020 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_001133_030--Hb_002521_020 Hb_007575_080 Hb_007575_080 Hb_008053_040--Hb_007575_080 Hb_005186_040 Hb_005186_040 Hb_008053_040--Hb_005186_040 Hb_008053_040--Hb_002521_020 Hb_008053_040--Hb_000665_230 Hb_024185_010 Hb_024185_010 Hb_008053_040--Hb_024185_010 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_011202_020--Hb_009486_170 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_002521_020--Hb_005186_040 Hb_001124_050 Hb_001124_050 Hb_002521_020--Hb_001124_050 Hb_002521_020--Hb_009486_170 Hb_001377_100 Hb_001377_100 Hb_002521_020--Hb_001377_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.01344 14.37 5.37115 8.70928 7.3828 9.66465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04258 3.50738 5.62524 8.14045 11.9921

CAGE analysis