Hb_000261_030

Information

Type -
Description -
Location Contig261: 21950-28711
Sequence    

Annotation

kegg
ID rcu:RCOM_1017950
description hypothetical protein
nr
ID XP_012071096.1
description PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01093 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27228: 22042-22412 , PASA_asmbl_27229: 22970-28613 , PASA_asmbl_27230: 29321-29918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_030 0.0 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
2 Hb_000740_100 0.0505219504 - - calpain, putative [Ricinus communis]
3 Hb_000035_410 0.0506546703 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
4 Hb_001235_230 0.0556917656 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
5 Hb_003124_160 0.0626739908 - - dynamin, putative [Ricinus communis]
6 Hb_004453_110 0.0628210823 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
7 Hb_002329_040 0.0629255976 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
8 Hb_032920_130 0.0629722646 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
9 Hb_160459_040 0.0631489256 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
10 Hb_089140_050 0.064062165 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
11 Hb_005402_040 0.0649101666 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
12 Hb_011202_020 0.0654243929 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
13 Hb_027380_140 0.0658974437 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
14 Hb_000960_050 0.0666364896 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
15 Hb_007426_130 0.0675676869 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_002044_170 0.0690718955 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
17 Hb_000176_130 0.0691565187 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
18 Hb_003739_030 0.0695334895 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
19 Hb_012053_080 0.0699960101 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_008112_030 0.0715658659 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000261_030 Hb_000261_030 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_002329_040--Hb_027380_140 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4208 17.3949 11.399 11.8129 18.791 19.3822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86404 5.51031 8.00532 15.3566 14.337

CAGE analysis