Hb_000896_080

Information

Type -
Description -
Location Contig896: 58153-65719
Sequence    

Annotation

kegg
ID vvi:100264514
description peptidyl-prolyl cis-trans isomerase CYP95
nr
ID XP_002285000.2
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
swissprot
ID Q8RWY7
description Peptidyl-prolyl cis-trans isomerase CYP95 OS=Arabidopsis thaliana GN=CYP95 PE=1 SV=2
trembl
ID F6H3U3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05090 PE=4 SV=1
Gene Ontology
ID GO:0044238
description peptidyl-prolyl cis-trans isomerase cyp95-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61771: 58149-65655 , PASA_asmbl_61772: 59685-60060 , PASA_asmbl_61773: 64900-65024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_080 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
2 Hb_004453_110 0.0598400767 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
3 Hb_005731_090 0.0685770797 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
4 Hb_000406_230 0.07073113 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
5 Hb_000264_030 0.0708129926 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
6 Hb_008112_030 0.0712234479 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000960_050 0.0719822829 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
8 Hb_002422_050 0.0750447656 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
9 Hb_000152_260 0.0753638918 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
10 Hb_003371_110 0.076384747 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
11 Hb_006882_020 0.0766567707 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002174_020 0.0792853274 - - ring finger protein, putative [Ricinus communis]
13 Hb_000429_220 0.0799772425 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
14 Hb_000914_120 0.0817705373 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
15 Hb_001417_050 0.0826851825 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
16 Hb_000230_090 0.0829269338 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
17 Hb_000261_030 0.0832208783 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
18 Hb_000183_020 0.0846416994 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_160459_040 0.0856580303 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
20 Hb_001025_080 0.0858306865 - - hypothetical protein JCGZ_11431 [Jatropha curcas]

Gene co-expression network

sample Hb_000896_080 Hb_000896_080 Hb_004453_110 Hb_004453_110 Hb_000896_080--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_000896_080--Hb_005731_090 Hb_000406_230 Hb_000406_230 Hb_000896_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000896_080--Hb_000264_030 Hb_008112_030 Hb_008112_030 Hb_000896_080--Hb_008112_030 Hb_000960_050 Hb_000960_050 Hb_000896_080--Hb_000960_050 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_004453_110--Hb_008112_030 Hb_005731_090--Hb_002174_020 Hb_005731_090--Hb_008112_030 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_030627_060 Hb_030627_060 Hb_005731_090--Hb_030627_060 Hb_023344_010 Hb_023344_010 Hb_000406_230--Hb_023344_010 Hb_007558_070 Hb_007558_070 Hb_000406_230--Hb_007558_070 Hb_000010_360 Hb_000010_360 Hb_000406_230--Hb_000010_360 Hb_000406_230--Hb_000960_050 Hb_000191_130 Hb_000191_130 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_000170_150 Hb_000170_150 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_001799_050 Hb_001799_050 Hb_000264_030--Hb_001799_050 Hb_000289_040 Hb_000289_040 Hb_000264_030--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_000264_030--Hb_140049_040 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_008112_030--Hb_000960_050 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4922 34.6264 22.0746 22.6906 42.3818 48.9495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4616 21.0282 11.3069 28.0363 26.8138

CAGE analysis