Hb_089140_050

Information

Type -
Description -
Location Contig89140: 41900-43913
Sequence    

Annotation

kegg
ID rcu:RCOM_0711910
description hypothetical protein
nr
ID KDP33914.1
description hypothetical protein JCGZ_07485 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07485 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61665: 41840-43895 , PASA_asmbl_61667: 42303-43136 , PASA_asmbl_61668: 42021-43889
cDNA
(Sanger)
(ID:Location)		 022_K15.ab1: 41840-43292 , 049_A01.ab1: 41840-43130

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_050 0.0 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
2 Hb_004453_110 0.0551063435 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
3 Hb_000671_070 0.0571231915 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
4 Hb_000429_220 0.0606591097 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
5 Hb_000261_030 0.064062165 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
6 Hb_011344_020 0.0642279676 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
7 Hb_000035_410 0.0725945564 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
8 Hb_001277_300 0.0742097043 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
9 Hb_008024_030 0.075328748 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
10 Hb_003884_030 0.0757074552 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
11 Hb_001235_230 0.0766492022 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_160459_040 0.0773121727 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
13 Hb_027380_140 0.0774432015 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
14 Hb_004701_050 0.0785329594 - - alpha1 family protein [Populus trichocarpa]
15 Hb_000230_090 0.0787884515 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
16 Hb_000855_020 0.0788020623 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
17 Hb_032920_130 0.0790721058 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
18 Hb_001191_120 0.0790831515 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
19 Hb_000243_210 0.0794110762 - - protein with unknown function [Ricinus communis]
20 Hb_002044_170 0.0796500268 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]

Gene co-expression network

sample Hb_089140_050 Hb_089140_050 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_000671_070 Hb_000671_070 Hb_089140_050--Hb_000671_070 Hb_000429_220 Hb_000429_220 Hb_089140_050--Hb_000429_220 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410 Hb_004453_110--Hb_000429_220 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000025_320 Hb_000025_320 Hb_000671_070--Hb_000025_320 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_002823_030 Hb_002823_030 Hb_000429_220--Hb_002823_030 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_000958_070 Hb_000958_070 Hb_011344_020--Hb_000958_070 Hb_000343_110 Hb_000343_110 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000376_060 Hb_000376_060 Hb_011344_020--Hb_000376_060 Hb_011344_020--Hb_000429_220 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_000035_410--Hb_001235_230 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6642 25.4273 17.8182 18.8369 33.0275 25.0363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1502 9.85623 11.5451 17.2971 26.1984

CAGE analysis