Hb_000376_060

Information

Type -
Description -
Location Contig376: 126248-135605
Sequence    

Annotation

kegg
ID tcc:TCM_007095
description RING/U-box domain-containing protein isoform 1
nr
ID XP_012087495.1
description PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID A0A067JLY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23989 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin ligase sud1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38352: 126128-135504 , PASA_asmbl_38354: 132125-132372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000376_060 0.0 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
2 Hb_000086_150 0.0859610462 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
3 Hb_007305_020 0.0888833601 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
4 Hb_011344_020 0.090772165 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
5 Hb_004701_050 0.091566407 - - alpha1 family protein [Populus trichocarpa]
6 Hb_041327_020 0.0944908951 - - conserved hypothetical protein [Ricinus communis]
7 Hb_098209_010 0.0961630644 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
8 Hb_162275_040 0.0962299426 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009486_080 0.0967721086 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
10 Hb_006787_060 0.0973625048 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
11 Hb_000260_560 0.0998426792 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
12 Hb_000082_070 0.0999344071 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
13 Hb_032920_130 0.1012882872 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
14 Hb_089140_050 0.1019683055 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
15 Hb_000958_070 0.1027318567 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
16 Hb_006355_020 0.1036483706 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
17 Hb_002539_110 0.1060012671 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
18 Hb_000035_410 0.1061541221 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_001401_060 0.1086276446 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
20 Hb_002631_140 0.1108461486 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000376_060 Hb_000376_060 Hb_000086_150 Hb_000086_150 Hb_000376_060--Hb_000086_150 Hb_007305_020 Hb_007305_020 Hb_000376_060--Hb_007305_020 Hb_011344_020 Hb_011344_020 Hb_000376_060--Hb_011344_020 Hb_004701_050 Hb_004701_050 Hb_000376_060--Hb_004701_050 Hb_041327_020 Hb_041327_020 Hb_000376_060--Hb_041327_020 Hb_098209_010 Hb_098209_010 Hb_000376_060--Hb_098209_010 Hb_000086_150--Hb_007305_020 Hb_009486_080 Hb_009486_080 Hb_000086_150--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_000086_150--Hb_000573_060 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000260_560 Hb_000260_560 Hb_000086_150--Hb_000260_560 Hb_002641_130 Hb_002641_130 Hb_000086_150--Hb_002641_130 Hb_000205_260 Hb_000205_260 Hb_007305_020--Hb_000205_260 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_089140_050 Hb_089140_050 Hb_011344_020--Hb_089140_050 Hb_000958_070 Hb_000958_070 Hb_011344_020--Hb_000958_070 Hb_000343_110 Hb_000343_110 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000429_220 Hb_000429_220 Hb_011344_020--Hb_000429_220 Hb_004701_050--Hb_089140_050 Hb_162275_040 Hb_162275_040 Hb_004701_050--Hb_162275_040 Hb_000261_100 Hb_000261_100 Hb_004701_050--Hb_000261_100 Hb_000780_190 Hb_000780_190 Hb_004701_050--Hb_000780_190 Hb_010272_010 Hb_010272_010 Hb_004701_050--Hb_010272_010 Hb_000035_410 Hb_000035_410 Hb_004701_050--Hb_000035_410 Hb_005496_050 Hb_005496_050 Hb_041327_020--Hb_005496_050 Hb_041327_020--Hb_098209_010 Hb_132840_110 Hb_132840_110 Hb_041327_020--Hb_132840_110 Hb_001619_050 Hb_001619_050 Hb_041327_020--Hb_001619_050 Hb_000320_470 Hb_000320_470 Hb_041327_020--Hb_000320_470 Hb_000445_140 Hb_000445_140 Hb_041327_020--Hb_000445_140 Hb_000457_230 Hb_000457_230 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_001377_110 Hb_001377_110 Hb_098209_010--Hb_001377_110 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_005895_010 Hb_005895_010 Hb_098209_010--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_098209_010--Hb_002014_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.5663 53.4345 44.0198 40.4402 60.4179 48.5704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2081 7.67624 19.6699 24.3942 64.8098

CAGE analysis