Hb_002641_130

Information

Type -
Description -
Location Contig2641: 168090-175348
Sequence    

Annotation

kegg
ID rcu:RCOM_1000720
description hypothetical protein
nr
ID XP_012084099.1
description PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19016 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27666: 168104-175291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_130 0.0 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
2 Hb_000573_060 0.0520884627 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
3 Hb_001244_150 0.0696612268 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
4 Hb_000563_130 0.0699897892 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
5 Hb_009486_080 0.0702450183 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
6 Hb_001001_150 0.0727272254 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000086_150 0.0764572554 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
8 Hb_007894_160 0.0785455285 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
9 Hb_005402_040 0.0799417397 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
10 Hb_004064_050 0.0803982958 - - Structural maintenance of chromosome, putative [Ricinus communis]
11 Hb_002350_010 0.0826707583 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
12 Hb_003436_020 0.0828866493 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
13 Hb_001789_040 0.0853710012 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
14 Hb_027472_220 0.0854656026 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
15 Hb_001454_170 0.0868909764 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
16 Hb_000473_110 0.0870254683 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
17 Hb_000671_070 0.0873147025 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
18 Hb_001318_070 0.0875786639 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
19 Hb_000243_130 0.0876099748 - - hypothetical protein M569_10795, partial [Genlisea aurea]
20 Hb_000035_170 0.0881399856 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002641_130 Hb_002641_130 Hb_000573_060 Hb_000573_060 Hb_002641_130--Hb_000573_060 Hb_001244_150 Hb_001244_150 Hb_002641_130--Hb_001244_150 Hb_000563_130 Hb_000563_130 Hb_002641_130--Hb_000563_130 Hb_009486_080 Hb_009486_080 Hb_002641_130--Hb_009486_080 Hb_001001_150 Hb_001001_150 Hb_002641_130--Hb_001001_150 Hb_000086_150 Hb_000086_150 Hb_002641_130--Hb_000086_150 Hb_000573_060--Hb_001244_150 Hb_000573_060--Hb_000086_150 Hb_000260_560 Hb_000260_560 Hb_000573_060--Hb_000260_560 Hb_000573_060--Hb_009486_080 Hb_000573_060--Hb_001001_150 Hb_002233_130 Hb_002233_130 Hb_001244_150--Hb_002233_130 Hb_004324_330 Hb_004324_330 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300 Hb_004267_040 Hb_004267_040 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000603_030 Hb_000603_030 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_009486_080--Hb_000086_150 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_009486_080--Hb_000260_560 Hb_146224_010 Hb_146224_010 Hb_001001_150--Hb_146224_010 Hb_000035_170 Hb_000035_170 Hb_001001_150--Hb_000035_170 Hb_000473_110 Hb_000473_110 Hb_001001_150--Hb_000473_110 Hb_001318_070 Hb_001318_070 Hb_001001_150--Hb_001318_070 Hb_007305_020 Hb_007305_020 Hb_000086_150--Hb_007305_020 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000086_150--Hb_000260_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3501 28.8781 26.5561 20.9084 39.78 23.6136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87596 12.3423 16.1493 28.285 33.8507

CAGE analysis