Hb_009486_080

Information

Type -
Description -
Location Contig9486: 38102-42259
Sequence    

Annotation

kegg
ID rcu:RCOM_0658480
description hypothetical protein
nr
ID XP_012083725.1
description PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14656 PE=4 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerases

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63345: 38148-42212 , PASA_asmbl_63346: 39257-39385
cDNA
(Sanger)
(ID:Location)		 002_N05.ab1: 38983-42207

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_080 0.0 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
2 Hb_000086_150 0.0516076972 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
3 Hb_002641_130 0.0702450183 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
4 Hb_000573_060 0.074221874 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
5 Hb_002014_040 0.0762668605 - - site-1 protease, putative [Ricinus communis]
6 Hb_001454_170 0.082302081 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
7 Hb_000260_560 0.0828569409 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
8 Hb_006618_090 0.0833010409 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
9 Hb_032920_130 0.0844183509 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
10 Hb_162275_040 0.084705403 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003124_160 0.0851145458 - - dynamin, putative [Ricinus communis]
12 Hb_007305_020 0.0854420073 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
13 Hb_000243_130 0.0856189017 - - hypothetical protein M569_10795, partial [Genlisea aurea]
14 Hb_001318_070 0.087990754 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
15 Hb_007894_160 0.0882424037 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
16 Hb_002686_040 0.0915041319 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
17 Hb_004064_050 0.0915396447 - - Structural maintenance of chromosome, putative [Ricinus communis]
18 Hb_000082_070 0.0917734041 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
19 Hb_103747_020 0.0938446855 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
20 Hb_002027_280 0.0941343016 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_080 Hb_009486_080 Hb_000086_150 Hb_000086_150 Hb_009486_080--Hb_000086_150 Hb_002641_130 Hb_002641_130 Hb_009486_080--Hb_002641_130 Hb_000573_060 Hb_000573_060 Hb_009486_080--Hb_000573_060 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_000260_560 Hb_000260_560 Hb_009486_080--Hb_000260_560 Hb_007305_020 Hb_007305_020 Hb_000086_150--Hb_007305_020 Hb_000086_150--Hb_000573_060 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000086_150--Hb_000260_560 Hb_000086_150--Hb_002641_130 Hb_002641_130--Hb_000573_060 Hb_001244_150 Hb_001244_150 Hb_002641_130--Hb_001244_150 Hb_000563_130 Hb_000563_130 Hb_002641_130--Hb_000563_130 Hb_001001_150 Hb_001001_150 Hb_002641_130--Hb_001001_150 Hb_000573_060--Hb_001244_150 Hb_000573_060--Hb_000260_560 Hb_000573_060--Hb_001001_150 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_000949_020 Hb_000949_020 Hb_001454_170--Hb_000949_020 Hb_001673_050 Hb_001673_050 Hb_001454_170--Hb_001673_050 Hb_000334_130 Hb_000334_130 Hb_001454_170--Hb_000334_130 Hb_134362_010 Hb_134362_010 Hb_001454_170--Hb_134362_010 Hb_001454_170--Hb_000573_060 Hb_000958_070 Hb_000958_070 Hb_000260_560--Hb_000958_070 Hb_002233_130 Hb_002233_130 Hb_000260_560--Hb_002233_130 Hb_000260_560--Hb_001244_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.44072 11.7474 10.6561 8.59056 13.756 9.8838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12253 2.87025 4.89823 7.46714 10.7987

CAGE analysis