Hb_000563_130

Information

Type -
Description -
Location Contig563: 82475-89724
Sequence    

Annotation

kegg
ID rcu:RCOM_0682900
description nucleotide binding protein, putative
nr
ID XP_012084002.1
description PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
swissprot
ID Q6ZQL4
description WD repeat-containing protein 43 OS=Mus musculus GN=Wdr43 PE=2 SV=2
trembl
ID A0A067K6G9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18935 PE=4 SV=1
Gene Ontology
ID GO:0000478
description wd repeat-containing protein 43 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48887: 82537-86372 , PASA_asmbl_48889: 87349-88727 , PASA_asmbl_48890: 87349-88760 , PASA_asmbl_48891: 87541-88731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_130 0.0 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
2 Hb_004267_040 0.0518571062 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
3 Hb_003645_060 0.0574514877 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
4 Hb_000603_030 0.0579757324 - - Ribonuclease III, putative [Ricinus communis]
5 Hb_000398_080 0.0591844314 - - tip120, putative [Ricinus communis]
6 Hb_000011_100 0.0607722218 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
7 Hb_000836_410 0.0632746153 - - sec10, putative [Ricinus communis]
8 Hb_000671_070 0.063732272 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
9 Hb_000227_220 0.0641379853 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_000243_210 0.0659642899 - - protein with unknown function [Ricinus communis]
11 Hb_000390_230 0.0664522931 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
12 Hb_000914_120 0.0669526126 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
13 Hb_003436_020 0.0692138331 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
14 Hb_000035_170 0.0694643581 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
15 Hb_005402_040 0.0697461837 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
16 Hb_002641_130 0.0699897892 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
17 Hb_000523_080 0.07006213 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
18 Hb_001814_030 0.0703095494 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
19 Hb_000174_060 0.0707863975 - - zinc finger family protein [Populus trichocarpa]
20 Hb_000115_280 0.0716461521 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_000563_130 Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000603_030 Hb_000603_030 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_004267_040--Hb_000398_080 Hb_004267_040--Hb_000603_030 Hb_003645_060--Hb_004267_040 Hb_001655_030 Hb_001655_030 Hb_003645_060--Hb_001655_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_000035_170 Hb_000035_170 Hb_003645_060--Hb_000035_170 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000398_080--Hb_000011_100 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000011_100--Hb_000120_280 Hb_000390_230 Hb_000390_230 Hb_000836_410--Hb_000390_230 Hb_008568_020 Hb_008568_020 Hb_000836_410--Hb_008568_020 Hb_000230_090 Hb_000230_090 Hb_000836_410--Hb_000230_090 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000457_230 Hb_000457_230 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.49276 5.21011 5.74831 4.07972 6.68558 5.54162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69078 3.2869 3.38687 5.94966 5.79687

CAGE analysis