Hb_000710_040

Information

Type -
Description -
Location Contig710: 24278-39099
Sequence    

Annotation

kegg
ID rcu:RCOM_1315090
description hypothetical protein
nr
ID XP_012086577.1
description PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
swissprot
ID Q6AI08
description HEAT repeat-containing protein 6 OS=Homo sapiens GN=HEATR6 PE=1 SV=1
trembl
ID B9RYZ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1315090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55213: 24244-24445 , PASA_asmbl_55214: 24486-25244 , PASA_asmbl_55215: 25447-26307 , PASA_asmbl_55216: 26357-29204 , PASA_asmbl_55218: 31958-32337 , PASA_asmbl_55220: 33073-33872 , PASA_asmbl_55221: 34966-38762 , PASA_asmbl_55222: 34159-36233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_040 0.0 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
2 Hb_000011_100 0.0472385125 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
3 Hb_001089_030 0.0570552817 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
4 Hb_000227_220 0.0582801378 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
5 Hb_183510_020 0.0632777421 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_057688_010 0.0635901977 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
7 Hb_001430_080 0.0637746742 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
8 Hb_001720_040 0.0641792928 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000189_600 0.0651301316 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
10 Hb_005867_070 0.0669297235 - - DNA binding protein, putative [Ricinus communis]
11 Hb_004976_010 0.0678391108 - - hypothetical protein RCOM_1429110 [Ricinus communis]
12 Hb_003517_040 0.0696148509 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
13 Hb_000976_140 0.071387959 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
14 Hb_000398_080 0.0719271641 - - tip120, putative [Ricinus communis]
15 Hb_000236_400 0.0721434883 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
16 Hb_055235_020 0.0724410183 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
17 Hb_004020_040 0.0730967447 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
18 Hb_003943_010 0.0735883955 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004267_040 0.0748663394 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
20 Hb_000803_270 0.0755437938 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000710_040 Hb_000710_040 Hb_000011_100 Hb_000011_100 Hb_000710_040--Hb_000011_100 Hb_001089_030 Hb_001089_030 Hb_000710_040--Hb_001089_030 Hb_000227_220 Hb_000227_220 Hb_000710_040--Hb_000227_220 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_007590_020 Hb_007590_020 Hb_001089_030--Hb_007590_020 Hb_001089_030--Hb_000227_220 Hb_001720_040 Hb_001720_040 Hb_001089_030--Hb_001720_040 Hb_004020_040 Hb_004020_040 Hb_001089_030--Hb_004020_040 Hb_004837_180 Hb_004837_180 Hb_001089_030--Hb_004837_180 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_003943_010 Hb_003943_010 Hb_000227_220--Hb_003943_010 Hb_000227_220--Hb_004020_040 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_002205_030 Hb_002205_030 Hb_057688_010--Hb_002205_030 Hb_057688_010--Hb_001089_030 Hb_057688_010--Hb_001720_040 Hb_000803_270 Hb_000803_270 Hb_057688_010--Hb_000803_270 Hb_057688_010--Hb_183510_020 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.00588 7.94358 6.93823 6.63628 7.27849 5.58947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8429 5.74626 3.11613 7.60146 7.23815

CAGE analysis