Hb_001301_150

Information

Type -
Description -
Location Contig1301: 113438-121374
Sequence    

Annotation

kegg
ID vvi:100245239
description UPF0136 membrane protein At2g26240
nr
ID XP_002280849.1
description PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
swissprot
ID Q9C6T7
description Protein FATTY ACID EXPORT 5 OS=Arabidopsis thaliana GN=FAX5 PE=3 SV=1
trembl
ID A0A061F6B6
description Transmembrane proteins 14C OS=Theobroma cacao GN=TCM_030947 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0136 membrane protein at2g26240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09010: 113434-121118 , PASA_asmbl_09011: 114629-114997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_150 0.0 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
2 Hb_003883_060 0.0551033921 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
3 Hb_000138_100 0.0600475928 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
4 Hb_004319_080 0.0613090323 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
5 Hb_001876_050 0.0614318054 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
6 Hb_000329_800 0.0624628827 - - conserved hypothetical protein [Ricinus communis]
7 Hb_183510_020 0.0636891615 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_006831_140 0.06408258 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_001999_310 0.0684386037 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
10 Hb_004846_220 0.0693879312 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
11 Hb_000556_120 0.0695441374 - - Spastin, putative [Ricinus communis]
12 Hb_000167_010 0.0702234171 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003517_040 0.0719364178 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
14 Hb_000352_310 0.0726538848 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
15 Hb_001021_150 0.0731232004 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
16 Hb_001671_100 0.0740997908 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
17 Hb_000708_030 0.074195764 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
18 Hb_000406_200 0.0747300593 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
19 Hb_010921_050 0.0752967711 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
20 Hb_002439_010 0.0760818345 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_150 Hb_001301_150 Hb_003883_060 Hb_003883_060 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_000035_470 Hb_000035_470 Hb_004319_080--Hb_000035_470 Hb_004319_080--Hb_000329_800 Hb_001040_100 Hb_001040_100 Hb_004319_080--Hb_001040_100 Hb_004319_080--Hb_003883_060 Hb_000640_170 Hb_000640_170 Hb_004319_080--Hb_000640_170 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_000329_800--Hb_000035_470 Hb_000329_800--Hb_004846_220 Hb_003159_140 Hb_003159_140 Hb_000329_800--Hb_003159_140 Hb_005000_170 Hb_005000_170 Hb_000329_800--Hb_005000_170 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1833 11.3297 13.0194 13.8193 11.0383 11.1036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3339 12.8003 8.5259 19.9954 15.2635

CAGE analysis