Hb_004705_170

Information

Type -
Description -
Location Contig4705: 184455-187849
Sequence    

Annotation

kegg
ID rcu:RCOM_2004830
description hypothetical protein
nr
ID XP_012088717.1
description PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
swissprot
ID Q8LG98
description Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2
trembl
ID A0A067JKE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23096 PE=4 SV=1
Gene Ontology
ID GO:0044237
description ubiquitin thioesterase otubain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44248: 184501-187914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_170 0.0 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
2 Hb_000215_300 0.0399865892 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
3 Hb_007472_070 0.0498816576 - - cir, putative [Ricinus communis]
4 Hb_000345_160 0.0516698887 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
5 Hb_004037_020 0.0627207543 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
6 Hb_000778_010 0.0641906424 - - hypothetical protein [Bacillus subtilis]
7 Hb_163175_010 0.0660708586 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
8 Hb_001481_060 0.0667793218 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
9 Hb_003883_060 0.0674354009 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
10 Hb_000787_160 0.0691077859 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
11 Hb_000962_030 0.0724706562 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
12 Hb_000139_080 0.0724878154 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
13 Hb_004452_110 0.0724968714 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
14 Hb_001405_210 0.0726808807 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
15 Hb_000976_140 0.0727788654 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
16 Hb_006452_120 0.0730077886 - - PREDICTED: protein FAM188A [Jatropha curcas]
17 Hb_007248_030 0.0734317515 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
18 Hb_002989_020 0.0736073868 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
19 Hb_086063_020 0.074579236 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
20 Hb_000049_020 0.0752192677 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004705_170 Hb_004705_170 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000345_160 Hb_000345_160 Hb_004705_170--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_000215_300--Hb_004037_020 Hb_000215_300--Hb_007472_070 Hb_007472_070--Hb_000778_010 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_006059_040 Hb_006059_040 Hb_007472_070--Hb_006059_040 Hb_000345_160--Hb_004037_020 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_004037_020--Hb_001481_060 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0684 18.9569 22.7862 32.185 12.6521 16.6013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1498 17.2476 13.1804 22.9893 21.1426

CAGE analysis