Hb_000215_300

Information

Type -
Description -
Location Contig215: 231918-236305
Sequence    

Annotation

kegg
ID rcu:RCOM_1048840
description mitochondrial processing peptidase alpha subunit, putative (EC:3.4.24.64)
nr
ID XP_002514191.1
description mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
swissprot
ID P29677
description Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1
trembl
ID B9RKE7
description Mitochondrial processing peptidase alpha subunit, putative OS=Ricinus communis GN=RCOM_1048840 PE=3 SV=1
Gene Ontology
ID GO:0004222
description mitochondrial-processing peptidase subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22207: 232036-235793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_300 0.0 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
2 Hb_004705_170 0.0399865892 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
3 Hb_086063_020 0.0562697478 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
4 Hb_000345_160 0.057229945 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
5 Hb_000258_110 0.0637330559 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
6 Hb_004037_020 0.064546866 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
7 Hb_007472_070 0.0662692517 - - cir, putative [Ricinus communis]
8 Hb_002445_060 0.0666852375 - - arf gtpase-activating protein, putative [Ricinus communis]
9 Hb_000049_020 0.0674480404 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_023313_030 0.0704375674 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000085_450 0.0722025822 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
12 Hb_004452_110 0.0727814095 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
13 Hb_001241_010 0.0729755748 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001405_210 0.0735898666 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
15 Hb_000313_220 0.074131688 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_000046_570 0.0745301254 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
17 Hb_002728_080 0.0748263094 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000089_180 0.0748575356 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
19 Hb_005797_010 0.0761183086 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
20 Hb_000976_140 0.0780133709 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_300 Hb_000215_300 Hb_004705_170 Hb_004705_170 Hb_000215_300--Hb_004705_170 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000345_160 Hb_000345_160 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_004037_020 Hb_004037_020 Hb_000215_300--Hb_004037_020 Hb_007472_070 Hb_007472_070 Hb_000215_300--Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_004705_170--Hb_000345_160 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_086063_020--Hb_000258_110 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_000345_160--Hb_004037_020 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_001141_310 Hb_001141_310 Hb_000258_110--Hb_001141_310 Hb_000836_460 Hb_000836_460 Hb_000258_110--Hb_000836_460 Hb_000238_030 Hb_000238_030 Hb_000258_110--Hb_000238_030 Hb_000258_110--Hb_004037_020 Hb_004037_020--Hb_016172_030 Hb_004037_020--Hb_001481_060 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_007472_070--Hb_000778_010 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_006059_040 Hb_006059_040 Hb_007472_070--Hb_006059_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5025 16.0351 18.2995 26.9244 10.9896 12.3749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4429 11.8003 9.4458 18.4209 16.3098

CAGE analysis