Hb_000238_030

Information

Type -
Description -
Location Contig238: 92066-109470
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID O49840
description Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24983: 92397-114718 , PASA_asmbl_24984: 104947-113377 , PASA_asmbl_24985: 105374-105892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000238_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001442_060 0.0628460332 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
3 Hb_000258_110 0.0637221542 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
4 Hb_000001_170 0.0703543866 - - amino acid transporter, putative [Ricinus communis]
5 Hb_102698_010 0.0710942202 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
6 Hb_012733_070 0.0772690356 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
7 Hb_086063_020 0.0781287553 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
8 Hb_002968_080 0.0788428445 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
9 Hb_004037_020 0.0803068118 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
10 Hb_007635_040 0.0806347477 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
11 Hb_179306_020 0.0811193912 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
12 Hb_009569_040 0.0825322583 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
13 Hb_001014_210 0.0834401885 - - CYP51 [Hevea brasiliensis]
14 Hb_000099_030 0.0838297052 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
15 Hb_141069_010 0.0841229214 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001488_220 0.0846222422 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_000836_460 0.084656641 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
18 Hb_001141_310 0.0849531327 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
19 Hb_000022_020 0.0854935836 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
20 Hb_005725_130 0.086566799 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000238_030 Hb_000238_030 Hb_001442_060 Hb_001442_060 Hb_000238_030--Hb_001442_060 Hb_000258_110 Hb_000258_110 Hb_000238_030--Hb_000258_110 Hb_000001_170 Hb_000001_170 Hb_000238_030--Hb_000001_170 Hb_102698_010 Hb_102698_010 Hb_000238_030--Hb_102698_010 Hb_012733_070 Hb_012733_070 Hb_000238_030--Hb_012733_070 Hb_086063_020 Hb_086063_020 Hb_000238_030--Hb_086063_020 Hb_000062_020 Hb_000062_020 Hb_001442_060--Hb_000062_020 Hb_000099_030 Hb_000099_030 Hb_001442_060--Hb_000099_030 Hb_056691_060 Hb_056691_060 Hb_001442_060--Hb_056691_060 Hb_001442_060--Hb_000001_170 Hb_012760_100 Hb_012760_100 Hb_001442_060--Hb_012760_100 Hb_001141_310 Hb_001141_310 Hb_000258_110--Hb_001141_310 Hb_000836_460 Hb_000836_460 Hb_000258_110--Hb_000836_460 Hb_000258_110--Hb_086063_020 Hb_000215_300 Hb_000215_300 Hb_000258_110--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_000258_110--Hb_004037_020 Hb_060980_010 Hb_060980_010 Hb_000001_170--Hb_060980_010 Hb_012286_040 Hb_012286_040 Hb_000001_170--Hb_012286_040 Hb_000001_170--Hb_102698_010 Hb_002749_060 Hb_002749_060 Hb_000001_170--Hb_002749_060 Hb_000011_270 Hb_000011_270 Hb_000001_170--Hb_000011_270 Hb_102698_010--Hb_004037_020 Hb_000890_060 Hb_000890_060 Hb_102698_010--Hb_000890_060 Hb_003517_040 Hb_003517_040 Hb_102698_010--Hb_003517_040 Hb_010142_020 Hb_010142_020 Hb_102698_010--Hb_010142_020 Hb_002890_130 Hb_002890_130 Hb_102698_010--Hb_002890_130 Hb_102698_010--Hb_012286_040 Hb_012330_010 Hb_012330_010 Hb_012733_070--Hb_012330_010 Hb_002968_080 Hb_002968_080 Hb_012733_070--Hb_002968_080 Hb_001348_080 Hb_001348_080 Hb_012733_070--Hb_001348_080 Hb_028960_020 Hb_028960_020 Hb_012733_070--Hb_028960_020 Hb_003280_020 Hb_003280_020 Hb_012733_070--Hb_003280_020 Hb_065500_020 Hb_065500_020 Hb_012733_070--Hb_065500_020 Hb_086063_020--Hb_000215_300 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.83206 9.49782 9.30989 18.0285 10.8865 10.4496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.96985 5.96332 5.96462 16.486 14.0784

CAGE analysis