Hb_000099_030

Information

Type -
Description -
Location Contig99: 46439-47926
Sequence    

Annotation

kegg
ID rcu:RCOM_0901440
description 6-phosphogluconate dehydrogenase, putative (EC:1.1.1.44)
nr
ID XP_002517676.1
description 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9FFR3
description 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=1 SV=1
trembl
ID B9RVA7
description 6-phosphogluconate dehydrogenase, decarboxylating OS=Ricinus communis GN=RCOM_0901440 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 6-phosphogluconate decarboxylating chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_030 0.0 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
2 Hb_001442_060 0.0688187181 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
3 Hb_039946_050 0.0767487634 - - catalytic, putative [Ricinus communis]
4 Hb_000238_030 0.0838297052 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_102698_010 0.0888869622 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
6 Hb_000453_250 0.0889791746 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
7 Hb_000001_170 0.0900360554 - - amino acid transporter, putative [Ricinus communis]
8 Hb_001195_470 0.090470134 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
9 Hb_000069_120 0.0909533252 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
10 Hb_004450_070 0.091142573 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
11 Hb_004019_120 0.0927430725 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
12 Hb_000537_050 0.0933686281 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
13 Hb_007747_170 0.0934790527 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
14 Hb_004143_160 0.0937677226 - - SAB, putative [Ricinus communis]
15 Hb_031527_030 0.094449633 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
16 Hb_001105_160 0.0952762334 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
17 Hb_001488_220 0.0959112753 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
18 Hb_000230_260 0.0959136965 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
19 Hb_012286_040 0.0960390443 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
20 Hb_003927_010 0.0962909066 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000099_030 Hb_000099_030 Hb_001442_060 Hb_001442_060 Hb_000099_030--Hb_001442_060 Hb_039946_050 Hb_039946_050 Hb_000099_030--Hb_039946_050 Hb_000238_030 Hb_000238_030 Hb_000099_030--Hb_000238_030 Hb_102698_010 Hb_102698_010 Hb_000099_030--Hb_102698_010 Hb_000453_250 Hb_000453_250 Hb_000099_030--Hb_000453_250 Hb_000001_170 Hb_000001_170 Hb_000099_030--Hb_000001_170 Hb_000062_020 Hb_000062_020 Hb_001442_060--Hb_000062_020 Hb_001442_060--Hb_000238_030 Hb_056691_060 Hb_056691_060 Hb_001442_060--Hb_056691_060 Hb_001442_060--Hb_000001_170 Hb_012760_100 Hb_012760_100 Hb_001442_060--Hb_012760_100 Hb_005663_110 Hb_005663_110 Hb_039946_050--Hb_005663_110 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_179306_020 Hb_179306_020 Hb_039946_050--Hb_179306_020 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050 Hb_000258_110 Hb_000258_110 Hb_000238_030--Hb_000258_110 Hb_000238_030--Hb_000001_170 Hb_000238_030--Hb_102698_010 Hb_012733_070 Hb_012733_070 Hb_000238_030--Hb_012733_070 Hb_086063_020 Hb_086063_020 Hb_000238_030--Hb_086063_020 Hb_004037_020 Hb_004037_020 Hb_102698_010--Hb_004037_020 Hb_000890_060 Hb_000890_060 Hb_102698_010--Hb_000890_060 Hb_003517_040 Hb_003517_040 Hb_102698_010--Hb_003517_040 Hb_010142_020 Hb_010142_020 Hb_102698_010--Hb_010142_020 Hb_002890_130 Hb_002890_130 Hb_102698_010--Hb_002890_130 Hb_012286_040 Hb_012286_040 Hb_102698_010--Hb_012286_040 Hb_000028_130 Hb_000028_130 Hb_000453_250--Hb_000028_130 Hb_004182_050 Hb_004182_050 Hb_000453_250--Hb_004182_050 Hb_000174_270 Hb_000174_270 Hb_000453_250--Hb_000174_270 Hb_031527_030 Hb_031527_030 Hb_000453_250--Hb_031527_030 Hb_001417_030 Hb_001417_030 Hb_000453_250--Hb_001417_030 Hb_004019_120 Hb_004019_120 Hb_000453_250--Hb_004019_120 Hb_060980_010 Hb_060980_010 Hb_000001_170--Hb_060980_010 Hb_000001_170--Hb_012286_040 Hb_000001_170--Hb_102698_010 Hb_002749_060 Hb_002749_060 Hb_000001_170--Hb_002749_060 Hb_000011_270 Hb_000011_270 Hb_000001_170--Hb_000011_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6015 28.2329 12.0814 35.8069 21.4263 22.5325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9345 9.22448 15.6489 39.9328 30.7006

CAGE analysis