Hb_000062_020

Information

Type -
Description -
Location Contig62: 9634-11698
Sequence    

Annotation

kegg
ID rcu:RCOM_1082560
description ubiquitin-protein ligase, putative
nr
ID XP_002515021.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID B9RMQ2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1082560 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51393: 9546-11490 , PASA_asmbl_51394: 11605-11748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_020 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_001442_060 0.0607841401 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
3 Hb_002284_250 0.0732677428 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
4 Hb_004109_230 0.0778819602 - - heat shock protein binding protein, putative [Ricinus communis]
5 Hb_004531_120 0.0784255892 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
6 Hb_001109_060 0.0798803051 - - amino acid transporter, putative [Ricinus communis]
7 Hb_012760_100 0.0799479485 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
8 Hb_000252_050 0.0840228206 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
9 Hb_001437_190 0.0860930284 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000990_090 0.0863446078 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_002414_050 0.0864965278 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
12 Hb_008484_060 0.087040514 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
13 Hb_000139_130 0.0871298462 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
14 Hb_031527_030 0.0888003559 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
15 Hb_000022_020 0.0893209084 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
16 Hb_001195_470 0.0897224159 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
17 Hb_000208_280 0.0905420464 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
18 Hb_000960_040 0.0909864122 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
19 Hb_000830_030 0.0911524661 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
20 Hb_102698_010 0.0912094296 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_020 Hb_000062_020 Hb_001442_060 Hb_001442_060 Hb_000062_020--Hb_001442_060 Hb_002284_250 Hb_002284_250 Hb_000062_020--Hb_002284_250 Hb_004109_230 Hb_004109_230 Hb_000062_020--Hb_004109_230 Hb_004531_120 Hb_004531_120 Hb_000062_020--Hb_004531_120 Hb_001109_060 Hb_001109_060 Hb_000062_020--Hb_001109_060 Hb_012760_100 Hb_012760_100 Hb_000062_020--Hb_012760_100 Hb_000238_030 Hb_000238_030 Hb_001442_060--Hb_000238_030 Hb_000099_030 Hb_000099_030 Hb_001442_060--Hb_000099_030 Hb_056691_060 Hb_056691_060 Hb_001442_060--Hb_056691_060 Hb_000001_170 Hb_000001_170 Hb_001442_060--Hb_000001_170 Hb_001442_060--Hb_012760_100 Hb_001437_190 Hb_001437_190 Hb_002284_250--Hb_001437_190 Hb_001258_110 Hb_001258_110 Hb_002284_250--Hb_001258_110 Hb_001821_150 Hb_001821_150 Hb_002284_250--Hb_001821_150 Hb_003912_070 Hb_003912_070 Hb_002284_250--Hb_003912_070 Hb_002284_250--Hb_004531_120 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_000139_130 Hb_000139_130 Hb_004109_230--Hb_000139_130 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040 Hb_000680_110 Hb_000680_110 Hb_004531_120--Hb_000680_110 Hb_004531_120--Hb_000139_130 Hb_004531_120--Hb_004109_230 Hb_000130_180 Hb_000130_180 Hb_004531_120--Hb_000130_180 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_005227_010 Hb_005227_010 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35043 5.70551 3.15474 7.92727 4.55321 7.37907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12004 2.97264 3.13958 5.60126 6.342

CAGE analysis