Hb_017295_010

Information

Type -
Description -
Location Contig17295: 3751-7716
Sequence    

Annotation

kegg
ID rcu:RCOM_0815450
description UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative
nr
ID XP_012078221.1
description PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
swissprot
ID Q8RXL8
description Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1
trembl
ID A0A067LLT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17322 PE=4 SV=1
Gene Ontology
ID GO:0005768
description uncharacterized membrane protein at1g06890

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16410: 3856-3965 , PASA_asmbl_16411: 4986-6954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017295_010 0.0 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
2 Hb_000107_210 0.0578456153 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
3 Hb_009529_030 0.0644863132 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
4 Hb_005227_010 0.0694247345 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
5 Hb_000008_270 0.0706561489 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
6 Hb_002273_120 0.0723432176 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
7 Hb_001109_060 0.0753466621 - - amino acid transporter, putative [Ricinus communis]
8 Hb_058999_030 0.0758736797 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
9 Hb_001948_130 0.076319246 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
10 Hb_000664_110 0.0782694507 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
11 Hb_000392_370 0.0812293703 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
12 Hb_002785_050 0.081837726 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
13 Hb_010272_010 0.0820748954 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
14 Hb_012215_010 0.0824349617 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
15 Hb_004659_020 0.0840692577 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
16 Hb_007426_150 0.0845494565 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
17 Hb_002539_110 0.0862702269 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
18 Hb_000208_260 0.0897093739 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
19 Hb_001882_050 0.0899933546 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
20 Hb_002248_110 0.0902356747 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]

Gene co-expression network

sample Hb_017295_010 Hb_017295_010 Hb_000107_210 Hb_000107_210 Hb_017295_010--Hb_000107_210 Hb_009529_030 Hb_009529_030 Hb_017295_010--Hb_009529_030 Hb_005227_010 Hb_005227_010 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_001109_060 Hb_001109_060 Hb_017295_010--Hb_001109_060 Hb_058999_030 Hb_058999_030 Hb_000107_210--Hb_058999_030 Hb_006909_070 Hb_006909_070 Hb_000107_210--Hb_006909_070 Hb_000101_380 Hb_000101_380 Hb_000107_210--Hb_000101_380 Hb_000107_210--Hb_005227_010 Hb_012215_010 Hb_012215_010 Hb_000107_210--Hb_012215_010 Hb_009529_030--Hb_002273_120 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_005227_010--Hb_001109_060 Hb_000086_440 Hb_000086_440 Hb_005227_010--Hb_000086_440 Hb_005227_010--Hb_000008_270 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_162275_040 Hb_162275_040 Hb_005227_010--Hb_162275_040 Hb_000008_270--Hb_000107_210 Hb_000008_270--Hb_001109_060 Hb_009851_050 Hb_009851_050 Hb_000008_270--Hb_009851_050 Hb_000008_270--Hb_009529_030 Hb_002273_120--Hb_002785_050 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_001109_060--Hb_000086_440 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0224 13.1948 16.8237 29.1967 29.767 28.3041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1366 9.72984 11.924 13.1646 22.0747

CAGE analysis