Hb_006909_070

Information

Type -
Description -
Location Contig6909: 81316-93713
Sequence    

Annotation

kegg
ID rcu:RCOM_0890970
description abc transporter, putative (EC:3.6.3.31)
nr
ID AIU41656.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9CAF5
description ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1
trembl
ID A0A097P9T8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI6 PE=2 SV=1
Gene Ontology
ID GO:0009570
description abc transporter i family member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54338: 81408-94655 , PASA_asmbl_54339: 81514-93221 , PASA_asmbl_54340: 81514-93699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006909_070 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_004097_070 0.0708754706 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
3 Hb_000107_210 0.0740712249 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
4 Hb_007943_110 0.0743421371 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
5 Hb_007919_100 0.0777332241 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
6 Hb_002947_030 0.0807140785 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
7 Hb_007441_130 0.0815687204 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003010_020 0.0815971654 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000346_060 0.0850307838 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
10 Hb_006882_020 0.0881015259 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000200_380 0.0881714693 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
12 Hb_007657_010 0.0888917387 - - ATP binding protein, putative [Ricinus communis]
13 Hb_032050_040 0.0891771201 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
14 Hb_019280_030 0.0895892156 - - -
15 Hb_017966_020 0.0901052219 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
16 Hb_152202_010 0.0913324293 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
17 Hb_001416_070 0.0914965719 - - oxidoreductase, putative [Ricinus communis]
18 Hb_003371_110 0.0919414639 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
19 Hb_000429_220 0.0931910903 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
20 Hb_014361_070 0.0934995234 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_006909_070 Hb_006909_070 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_007943_110 Hb_007943_110 Hb_006909_070--Hb_007943_110 Hb_007919_100 Hb_007919_100 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_017295_010 Hb_017295_010 Hb_000107_210--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000107_210--Hb_058999_030 Hb_000101_380 Hb_000101_380 Hb_000107_210--Hb_000101_380 Hb_005227_010 Hb_005227_010 Hb_000107_210--Hb_005227_010 Hb_012215_010 Hb_012215_010 Hb_000107_210--Hb_012215_010 Hb_014361_070 Hb_014361_070 Hb_007943_110--Hb_014361_070 Hb_000060_090 Hb_000060_090 Hb_007943_110--Hb_000060_090 Hb_003371_110 Hb_003371_110 Hb_007943_110--Hb_003371_110 Hb_006882_020 Hb_006882_020 Hb_007943_110--Hb_006882_020 Hb_003029_110 Hb_003029_110 Hb_007943_110--Hb_003029_110 Hb_032050_040 Hb_032050_040 Hb_007919_100--Hb_032050_040 Hb_152202_010 Hb_152202_010 Hb_007919_100--Hb_152202_010 Hb_007919_100--Hb_002947_030 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_000300_050 Hb_000300_050 Hb_007919_100--Hb_000300_050 Hb_007672_060 Hb_007672_060 Hb_002947_030--Hb_007672_060 Hb_033642_030 Hb_033642_030 Hb_002947_030--Hb_033642_030 Hb_002947_030--Hb_019280_030 Hb_002947_030--Hb_007943_110 Hb_002947_030--Hb_007657_010 Hb_000044_040 Hb_000044_040 Hb_007441_130--Hb_000044_040 Hb_000008_290 Hb_000008_290 Hb_007441_130--Hb_000008_290 Hb_023480_010 Hb_023480_010 Hb_007441_130--Hb_023480_010 Hb_007441_130--Hb_004097_070 Hb_007062_020 Hb_007062_020 Hb_007441_130--Hb_007062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2584 19.668 16.7337 22.9864 24.8159 37.1156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0051 18.9743 12.8271 13.9796 29.448

CAGE analysis