Hb_000107_210

Information

Type -
Description -
Location Contig107: 156597-161724
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21980g
description hypothetical protein
nr
ID XP_012077421.1
description PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q9SAR5
description Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2
trembl
ID A0A067LI29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02158: 142387-169314 , PASA_asmbl_02159: 142407-169349
cDNA
(Sanger)
(ID:Location)		 015_F08.ab1: 142387-160358

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_210 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
2 Hb_017295_010 0.0578456153 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
3 Hb_058999_030 0.0707298502 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
4 Hb_006909_070 0.0740712249 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000101_380 0.0780731541 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
6 Hb_005227_010 0.0810098625 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
7 Hb_012215_010 0.08193141 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
8 Hb_001109_060 0.0837901616 - - amino acid transporter, putative [Ricinus communis]
9 Hb_004097_070 0.0839552995 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
10 Hb_001948_130 0.0852733711 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
11 Hb_132840_110 0.0853636713 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
12 Hb_001635_160 0.0866658222 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
13 Hb_000208_260 0.0873321155 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
14 Hb_000007_280 0.08776155 - - hypothetical protein VITISV_000066 [Vitis vinifera]
15 Hb_000008_270 0.0877744486 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
16 Hb_002947_030 0.0881748272 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
17 Hb_000664_110 0.0897579482 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
18 Hb_002273_120 0.0927030191 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
19 Hb_002398_030 0.0943683094 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_002539_110 0.0945629234 - - hypothetical protein JCGZ_15697 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_210 Hb_000107_210 Hb_017295_010 Hb_017295_010 Hb_000107_210--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000107_210--Hb_058999_030 Hb_006909_070 Hb_006909_070 Hb_000107_210--Hb_006909_070 Hb_000101_380 Hb_000101_380 Hb_000107_210--Hb_000101_380 Hb_005227_010 Hb_005227_010 Hb_000107_210--Hb_005227_010 Hb_012215_010 Hb_012215_010 Hb_000107_210--Hb_012215_010 Hb_009529_030 Hb_009529_030 Hb_017295_010--Hb_009529_030 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_001109_060 Hb_001109_060 Hb_017295_010--Hb_001109_060 Hb_002398_030 Hb_002398_030 Hb_058999_030--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_007943_110 Hb_007943_110 Hb_006909_070--Hb_007943_110 Hb_007919_100 Hb_007919_100 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130 Hb_000007_280 Hb_000007_280 Hb_000101_380--Hb_000007_280 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000915_080 Hb_000915_080 Hb_000101_380--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_005227_010--Hb_001109_060 Hb_000086_440 Hb_000086_440 Hb_005227_010--Hb_000086_440 Hb_005227_010--Hb_000008_270 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_162275_040 Hb_162275_040 Hb_005227_010--Hb_162275_040 Hb_012215_010--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_012215_010--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_012215_010--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_012215_010--Hb_001005_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.477 63.5624 86.811 122.297 106.693 126.661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.8682 59.8594 50.5051 47.2927 100.708

CAGE analysis