Hb_004097_070

Information

Type -
Description -
Location Contig4097: 82701-84017
Sequence    

Annotation

kegg
ID mdm:103403669
description putative F-box protein At5g55150
nr
ID XP_012077684.1
description PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
swissprot
ID Q3EA00
description Putative F-box protein At4g17565 OS=Arabidopsis thaliana GN=At4g17565 PE=4 SV=1
trembl
ID A0A067KB34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12886 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at4g17565

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_070 0.0 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
2 Hb_001789_190 0.0380910407 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
3 Hb_000200_380 0.0607215345 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
4 Hb_007657_010 0.0636137616 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000346_060 0.0638410221 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
6 Hb_019280_030 0.0659678737 - - -
7 Hb_001635_040 0.0680833435 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
8 Hb_001001_080 0.0686095052 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
9 Hb_000343_250 0.070403792 - - PREDICTED: protein CASC3 [Jatropha curcas]
10 Hb_006909_070 0.0708754706 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_138596_010 0.0724340298 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
12 Hb_000044_040 0.0726770364 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_001268_280 0.0729041668 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000331_110 0.073983833 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_025557_050 0.074581445 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
16 Hb_008406_200 0.074959357 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
17 Hb_007441_130 0.0754802763 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007007_060 0.0755127731 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
19 Hb_003878_110 0.0755171954 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
20 Hb_132840_110 0.0770646988 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004097_070 Hb_004097_070 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_025557_050 Hb_025557_050 Hb_001789_190--Hb_025557_050 Hb_132840_110 Hb_132840_110 Hb_001789_190--Hb_132840_110 Hb_017151_010 Hb_017151_010 Hb_001789_190--Hb_017151_010 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_001021_220 Hb_001021_220 Hb_001789_190--Hb_001021_220 Hb_000343_250 Hb_000343_250 Hb_000200_380--Hb_000343_250 Hb_002732_040 Hb_002732_040 Hb_000200_380--Hb_002732_040 Hb_000200_380--Hb_019280_030 Hb_033642_030 Hb_033642_030 Hb_000200_380--Hb_033642_030 Hb_002272_130 Hb_002272_130 Hb_000200_380--Hb_002272_130 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_007657_010--Hb_000346_060 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_007657_010--Hb_000343_250 Hb_000346_060--Hb_000343_250 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_001922_150 Hb_001922_150 Hb_019280_030--Hb_001922_150 Hb_007416_340 Hb_007416_340 Hb_019280_030--Hb_007416_340 Hb_000484_030 Hb_000484_030 Hb_019280_030--Hb_000484_030 Hb_019280_030--Hb_033642_030 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5813 8.50013 9.56413 7.94169 9.23831 11.95
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33906 6.9738 6.08847 5.82967 10.402

CAGE analysis