Hb_001789_190

Information

Type -
Description -
Location Contig1789: 190728-193605
Sequence    

Annotation

kegg
ID rcu:RCOM_1583050
description hypothetical protein
nr
ID XP_012090213.1
description PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
swissprot
ID Q9SRE5
description Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=2 SV=1
trembl
ID A0A067JHK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26079 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17229: 190551-193584
cDNA
(Sanger)
(ID:Location)		 031_L11.ab1: 191922-193579

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_190 0.0 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
2 Hb_004097_070 0.0380910407 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
3 Hb_025557_050 0.0573874558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
4 Hb_132840_110 0.067770742 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_017151_010 0.06930241 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
6 Hb_001001_080 0.0695034685 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
7 Hb_001021_220 0.0697066085 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
8 Hb_000346_060 0.0732509001 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
9 Hb_001268_280 0.0744011845 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001635_040 0.0746791272 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
11 Hb_000340_420 0.0758285424 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
12 Hb_000044_040 0.0778532783 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_032202_080 0.079014146 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
14 Hb_007007_060 0.0790155465 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
15 Hb_004970_190 0.0805950037 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_008059_010 0.0808312581 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
17 Hb_007657_010 0.0816287637 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001377_110 0.0830308573 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
19 Hb_000205_190 0.0835281378 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_000599_080 0.0850703419 - - PREDICTED: TOM1-like protein 1 [Malus domestica]

Gene co-expression network

sample Hb_001789_190 Hb_001789_190 Hb_004097_070 Hb_004097_070 Hb_001789_190--Hb_004097_070 Hb_025557_050 Hb_025557_050 Hb_001789_190--Hb_025557_050 Hb_132840_110 Hb_132840_110 Hb_001789_190--Hb_132840_110 Hb_017151_010 Hb_017151_010 Hb_001789_190--Hb_017151_010 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_001021_220 Hb_001021_220 Hb_001789_190--Hb_001021_220 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_025557_050--Hb_017151_010 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_053079_020 Hb_053079_020 Hb_017151_010--Hb_053079_020 Hb_000115_280 Hb_000115_280 Hb_017151_010--Hb_000115_280 Hb_001619_050 Hb_001619_050 Hb_017151_010--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_017151_010--Hb_032202_080 Hb_000599_180 Hb_000599_180 Hb_001001_080--Hb_000599_180 Hb_000205_190 Hb_000205_190 Hb_001001_080--Hb_000205_190 Hb_001001_080--Hb_007657_010 Hb_001001_080--Hb_004097_070 Hb_004970_190 Hb_004970_190 Hb_001001_080--Hb_004970_190 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_001021_220--Hb_132840_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5728 13.214 17.2115 12.0862 13.7494 17.5527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.46 9.55875 9.89362 8.67323 17.9985

CAGE analysis