Hb_000340_420

Information

Type -
Description -
Location Contig340: 351843-357636
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13180g
description POPTRDRAFT_572777; transducin family protein
nr
ID XP_012092331.1
description PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
swissprot
ID Q40153
description LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1
trembl
ID A0A067JCG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22002 PE=4 SV=1
Gene Ontology
ID GO:0080008
description lec14b protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35578: 351867-357297 , PASA_asmbl_35579: 351867-357516
cDNA
(Sanger)
(ID:Location)		 027_L17.ab1: 355894-357297 , 030_D03.ab1: 355863-357297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_420 0.0 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
2 Hb_132840_110 0.0689004163 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
3 Hb_003531_080 0.0702627265 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
4 Hb_007007_120 0.0740587121 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
5 Hb_001789_190 0.0758285424 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
6 Hb_007290_030 0.0794925876 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
7 Hb_000214_050 0.0797586475 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
8 Hb_000699_030 0.0809520629 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
9 Hb_001500_060 0.0810000476 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
10 Hb_004097_070 0.0828096039 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
11 Hb_000120_130 0.0835242358 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
12 Hb_000599_180 0.0835935477 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_170416_010 0.0851290373 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
14 Hb_000915_180 0.0864973574 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
15 Hb_004970_190 0.0867961152 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_006275_020 0.087992317 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
17 Hb_030827_020 0.0901299089 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
18 Hb_001761_120 0.090237248 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
19 Hb_001001_080 0.0903947063 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
20 Hb_138596_010 0.0904340103 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_420 Hb_000340_420 Hb_132840_110 Hb_132840_110 Hb_000340_420--Hb_132840_110 Hb_003531_080 Hb_003531_080 Hb_000340_420--Hb_003531_080 Hb_007007_120 Hb_007007_120 Hb_000340_420--Hb_007007_120 Hb_001789_190 Hb_001789_190 Hb_000340_420--Hb_001789_190 Hb_007290_030 Hb_007290_030 Hb_000340_420--Hb_007290_030 Hb_000214_050 Hb_000214_050 Hb_000340_420--Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_132840_110--Hb_001789_190 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_001761_120 Hb_001761_120 Hb_003531_080--Hb_001761_120 Hb_001472_060 Hb_001472_060 Hb_003531_080--Hb_001472_060 Hb_170416_010 Hb_170416_010 Hb_003531_080--Hb_170416_010 Hb_003531_080--Hb_007007_120 Hb_003531_080--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_003513_010 Hb_003513_010 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040 Hb_004097_070 Hb_004097_070 Hb_001789_190--Hb_004097_070 Hb_025557_050 Hb_025557_050 Hb_001789_190--Hb_025557_050 Hb_017151_010 Hb_017151_010 Hb_001789_190--Hb_017151_010 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_001021_220 Hb_001021_220 Hb_001789_190--Hb_001021_220 Hb_000352_350 Hb_000352_350 Hb_007290_030--Hb_000352_350 Hb_007290_030--Hb_001761_120 Hb_001776_060 Hb_001776_060 Hb_007290_030--Hb_001776_060 Hb_000227_270 Hb_000227_270 Hb_007290_030--Hb_000227_270 Hb_000239_060 Hb_000239_060 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_000214_050--Hb_002811_270 Hb_003186_020 Hb_003186_020 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9906 47.3125 53.8932 46.8813 36.4754 38.5407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0932 29.5712 39.1112 23.7976 50.492

CAGE analysis