Hb_001021_220

Information

Type -
Description -
Location Contig1021: 241849-249367
Sequence    

Annotation

kegg
ID rcu:RCOM_0555370
description hypothetical protein
nr
ID XP_012082694.1
description PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
swissprot
ID Q8TB22
description Spermatogenesis-associated protein 20 OS=Homo sapiens GN=SPATA20 PE=2 SV=3
trembl
ID A0A067JZ65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13874 PE=4 SV=1
Gene Ontology
ID GO:0009507
description spermatogenesis-associated protein 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00998: 242030-245330 , PASA_asmbl_00999: 245378-249246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_220 0.0 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
2 Hb_001377_110 0.069054735 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
3 Hb_001789_190 0.0697066085 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
4 Hb_000139_230 0.0784891678 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
5 Hb_029904_020 0.079950613 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
6 Hb_001268_280 0.0867504466 - - conserved hypothetical protein [Ricinus communis]
7 Hb_132840_110 0.0895314636 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
8 Hb_004097_070 0.0900157221 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
9 Hb_012215_010 0.0904997518 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
10 Hb_000599_080 0.0931357213 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
11 Hb_000849_020 0.0936858812 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
12 Hb_002374_260 0.0950724359 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
13 Hb_010812_050 0.095137572 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
14 Hb_098209_010 0.0964606992 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
15 Hb_025557_050 0.0965535083 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
16 Hb_002304_060 0.0967806943 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
17 Hb_010150_020 0.0971066485 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
18 Hb_001619_050 0.0985083943 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
19 Hb_001269_210 0.099253219 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
20 Hb_000031_280 0.0998372028 - - -

Gene co-expression network

sample Hb_001021_220 Hb_001021_220 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110 Hb_098209_010 Hb_098209_010 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_004097_070 Hb_004097_070 Hb_001789_190--Hb_004097_070 Hb_025557_050 Hb_025557_050 Hb_001789_190--Hb_025557_050 Hb_001789_190--Hb_132840_110 Hb_017151_010 Hb_017151_010 Hb_001789_190--Hb_017151_010 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_000139_230--Hb_029904_020 Hb_000935_090 Hb_000935_090 Hb_000139_230--Hb_000935_090 Hb_000139_230--Hb_001377_110 Hb_000879_160 Hb_000879_160 Hb_000139_230--Hb_000879_160 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5385 20.2897 27.5322 19.3852 20.4675 32.6325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.174 7.72087 12.8156 13.3446 27.3875

CAGE analysis