Hb_002267_140

Information

Type -
Description -
Location Contig2267: 107309-122214
Sequence    

Annotation

kegg
ID rcu:RCOM_1491970
description hypothetical protein
nr
ID XP_012073413.1
description PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
swissprot
ID Q9C5H4
description VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1
trembl
ID A0A067KM25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06327 PE=4 SV=1
Gene Ontology
ID GO:0006886
description vhs domain-containing protein at3g16270-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23535: 107813-122198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_140 0.0 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
2 Hb_008253_030 0.0480598746 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
3 Hb_001767_140 0.0527616533 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
4 Hb_138596_010 0.0555505684 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
5 Hb_002276_240 0.0557169968 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
6 Hb_002253_080 0.0557951078 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
7 Hb_002843_120 0.0587323478 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
8 Hb_001268_280 0.0616608224 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001322_130 0.0630998465 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
10 Hb_002329_020 0.0632006784 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
11 Hb_000866_460 0.0641614691 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
12 Hb_030827_020 0.0642634956 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_000684_250 0.0656834397 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
14 Hb_002235_300 0.0662664305 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
15 Hb_000479_220 0.0678151448 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
16 Hb_000061_030 0.0679221908 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
17 Hb_031042_050 0.0692925796 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
18 Hb_002205_250 0.069361574 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_002085_030 0.069535273 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
20 Hb_004129_070 0.0701134074 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002267_140 Hb_002267_140 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120 Hb_008253_030--Hb_001767_140 Hb_008253_030--Hb_002253_080 Hb_001147_110 Hb_001147_110 Hb_008253_030--Hb_001147_110 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_008253_030--Hb_002276_240 Hb_001767_140--Hb_002253_080 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_138596_010--Hb_000479_220 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_004129_070 Hb_004129_070 Hb_002276_240--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002276_240--Hb_001147_110 Hb_002276_240--Hb_001767_140 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_000603_280 Hb_000603_280 Hb_002843_120--Hb_000603_280 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4636 19.3651 13.3416 12.0857 12.4347 15.4627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59028 8.22652 12.9404 9.53827 13.0513

CAGE analysis