Hb_000479_220

Information

Type -
Description -
Location Contig479: 157051-158080
Sequence    

Annotation

kegg
ID rcu:RCOM_0524270
description ubiquitin-protein ligase, putative
nr
ID XP_012084779.1
description PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19905 PE=4 SV=1
Gene Ontology
ID GO:0008270
description PREDICTED: uncharacterized protein LOC105644125

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44643: 156573-159049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_220 0.0 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
2 Hb_008253_030 0.0577914361 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
3 Hb_000070_080 0.0581221249 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
4 Hb_138596_010 0.0603216378 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
5 Hb_002615_090 0.0623380729 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
6 Hb_002253_080 0.0642328866 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
7 Hb_002843_120 0.0673678625 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
8 Hb_001767_140 0.0675008684 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_002267_140 0.0678151448 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
10 Hb_020831_030 0.0683787698 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003785_040 0.0699308274 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
12 Hb_008511_090 0.070001607 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
13 Hb_000366_120 0.0700389903 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
14 Hb_000803_070 0.0700421101 - - PREDICTED: protein TRAUCO [Jatropha curcas]
15 Hb_002276_240 0.0702574545 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
16 Hb_013399_100 0.0707838009 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002043_140 0.0712867905 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
18 Hb_003640_040 0.0716364871 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
19 Hb_030827_020 0.0722209058 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_004109_030 0.0730475111 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000479_220 Hb_000479_220 Hb_008253_030 Hb_008253_030 Hb_000479_220--Hb_008253_030 Hb_000070_080 Hb_000070_080 Hb_000479_220--Hb_000070_080 Hb_138596_010 Hb_138596_010 Hb_000479_220--Hb_138596_010 Hb_002615_090 Hb_002615_090 Hb_000479_220--Hb_002615_090 Hb_002253_080 Hb_002253_080 Hb_000479_220--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_000479_220--Hb_002843_120 Hb_001767_140 Hb_001767_140 Hb_008253_030--Hb_001767_140 Hb_008253_030--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_008253_030--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_008253_030--Hb_001147_110 Hb_002276_240 Hb_002276_240 Hb_008253_030--Hb_002276_240 Hb_008511_090 Hb_008511_090 Hb_000070_080--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_000070_080--Hb_008103_060 Hb_000162_280 Hb_000162_280 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_002078_220 Hb_002078_220 Hb_000070_080--Hb_002078_220 Hb_138596_010--Hb_002267_140 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_002615_090--Hb_001767_140 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_000603_280 Hb_000603_280 Hb_002843_120--Hb_000603_280 Hb_002843_120--Hb_002267_140 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8471 35.2073 17.8122 21.4971 25.3394 25.3492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9408 15.8838 22.07 14.8164 16.1821

CAGE analysis