Hb_002235_300

Information

Type -
Description -
Location Contig2235: 237228-241037
Sequence    

Annotation

kegg
ID rcu:RCOM_0299450
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084726.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
swissprot
ID Q9LXF4
description Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1
trembl
ID A0A067JT76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23235: 237634-237975 , PASA_asmbl_23237: 238988-239088 , PASA_asmbl_23238: 239698-239938 , PASA_asmbl_23239: 240702-240950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_300 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
2 Hb_000977_120 0.0408721808 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
3 Hb_002615_090 0.0538722945 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
4 Hb_000684_250 0.057025236 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
5 Hb_002253_080 0.0573204009 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
6 Hb_000025_320 0.0625449195 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
7 Hb_002267_140 0.0662664305 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
8 Hb_000960_100 0.0668083747 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
9 Hb_000174_220 0.0671785205 - - cohesin subunit rad21, putative [Ricinus communis]
10 Hb_002025_060 0.0686008624 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
11 Hb_000878_180 0.0686980985 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
12 Hb_001767_140 0.0687547706 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
13 Hb_002843_120 0.0697061081 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
14 Hb_003785_040 0.0709467149 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
15 Hb_002022_070 0.0712636993 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
16 Hb_008253_030 0.0716417033 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
17 Hb_001322_130 0.0741238479 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
18 Hb_008695_110 0.0754855098 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
19 Hb_138596_010 0.0759987346 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
20 Hb_000479_220 0.0760168058 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_300 Hb_002235_300 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_002615_090 Hb_002615_090 Hb_002235_300--Hb_002615_090 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002253_080 Hb_002253_080 Hb_002235_300--Hb_002253_080 Hb_000025_320 Hb_000025_320 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_000977_120--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_000977_120--Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_000977_120--Hb_000321_150 Hb_000977_120--Hb_002615_090 Hb_000977_120--Hb_000025_320 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_001329_140 Hb_001329_140 Hb_000684_250--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000684_250--Hb_003168_110 Hb_009767_080 Hb_009767_080 Hb_000684_250--Hb_009767_080 Hb_000684_250--Hb_002253_080 Hb_000684_250--Hb_002267_140 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_002267_140--Hb_008253_030 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5514 2.15224 1.0632 0.841519 1.49978 1.70256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.822131 0.753341 1.56528 1.01816 1.25287

CAGE analysis