Hb_000025_320

Information

Type -
Description -
Location Contig25: 298436-304465
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07380g
description POPTRDRAFT_804402; hypothetical protein
nr
ID XP_012065874.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
swissprot
ID Q9SUD8
description Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
trembl
ID A0A067L445
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22758 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g28010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26088: 298425-298857 , PASA_asmbl_26089: 298943-299206 , PASA_asmbl_26090: 299788-302503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_320 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
2 Hb_000671_070 0.0478595074 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
3 Hb_001191_120 0.0483540456 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
4 Hb_001550_060 0.0548792053 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
5 Hb_000960_100 0.05594227 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
6 Hb_002022_070 0.0561967029 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
7 Hb_006420_040 0.058404606 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
8 Hb_128743_010 0.0604536634 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_002253_080 0.0609478909 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
10 Hb_002235_300 0.0625449195 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
11 Hb_004108_100 0.0630480304 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
12 Hb_002174_030 0.0641001699 - - transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_009615_170 0.0652079708 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
14 Hb_002615_090 0.0662642406 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
15 Hb_012395_140 0.0675358665 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
16 Hb_000174_060 0.0678294909 - - zinc finger family protein [Populus trichocarpa]
17 Hb_001767_140 0.0687317904 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
18 Hb_000176_100 0.0692595156 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
19 Hb_004884_150 0.0695269586 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
20 Hb_000914_120 0.0702090306 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000025_320 Hb_000025_320 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_000671_070--Hb_001191_120 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_000671_070--Hb_006420_040 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000025_710 Hb_000025_710 Hb_001191_120--Hb_000025_710 Hb_001191_120--Hb_000243_210 Hb_001191_120--Hb_000914_120 Hb_001550_060--Hb_006420_040 Hb_012395_140 Hb_012395_140 Hb_001550_060--Hb_012395_140 Hb_003206_130 Hb_003206_130 Hb_001550_060--Hb_003206_130 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_000395_070 Hb_000395_070 Hb_001550_060--Hb_000395_070 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_004108_100 Hb_004108_100 Hb_000960_100--Hb_004108_100 Hb_000960_100--Hb_002022_070 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_000441_120 Hb_000441_120 Hb_006420_040--Hb_000441_120 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61117 4.11458 2.19146 1.62228 3.51047 3.0922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61105 1.39571 2.40218 2.68974 2.77846

CAGE analysis