Hb_000025_710

Information

Type transcription factor
Description TF Family: SNF2
Location Contig25: 659518-678674
Sequence    

Annotation

kegg
ID fve:101308441
description chromodomain-helicase-DNA-binding protein 2-like
nr
ID KHG14449.1
description Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
swissprot
ID F4IV99
description Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana GN=CHR5 PE=3 SV=1
trembl
ID A0A0B0NRL6
description Chromodomain-helicase-DNA-binding 2 OS=Gossypium arboreum GN=F383_08687 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromatin remodeling 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26168: 659577-664540 , PASA_asmbl_26169: 664563-680033 , PASA_asmbl_26170: 668512-668647
cDNA
(Sanger)
(ID:Location)		 003_A23.ab1: 678257-680033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_710 0.0 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
2 Hb_188063_010 0.0486479356 - - hypothetical protein RCOM_1469330 [Ricinus communis]
3 Hb_005402_040 0.0601328658 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
4 Hb_001191_120 0.0616783509 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
5 Hb_000176_100 0.0618062793 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
6 Hb_002333_050 0.0633750283 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
7 Hb_005542_140 0.0650181566 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
8 Hb_000083_070 0.0659071379 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
9 Hb_000170_150 0.0664846252 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
10 Hb_002784_010 0.0680971001 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
11 Hb_027472_220 0.0686425775 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
12 Hb_005357_260 0.0688601151 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
13 Hb_000261_150 0.0699757882 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003581_170 0.0699872024 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
15 Hb_002350_010 0.0700866628 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
16 Hb_000665_230 0.0703042478 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
17 Hb_009476_090 0.0706543742 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
18 Hb_159558_010 0.0715851124 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
19 Hb_000788_070 0.0718215505 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
20 Hb_002097_050 0.0722262599 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_710 Hb_000025_710 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_188063_010--Hb_002333_050 Hb_001699_280 Hb_001699_280 Hb_188063_010--Hb_001699_280 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_000671_070 Hb_000671_070 Hb_001191_120--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_001191_120--Hb_000025_320 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_000176_100--Hb_003581_170 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_002333_050--Hb_009486_170 Hb_002909_120 Hb_002909_120 Hb_002333_050--Hb_002909_120 Hb_002333_050--Hb_001699_280 Hb_000665_230 Hb_000665_230 Hb_002333_050--Hb_000665_230 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8318 21.8857 9.22344 9.20729 14.2934 15.2345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.02921 7.49962 7.33459 16.429 18.0429

CAGE analysis