Hb_001668_010

Information

Type -
Description -
Location Contig1668: 67803-76239
Sequence    

Annotation

kegg
ID rcu:RCOM_1556280
description RNA-binding protein with multiple splicing, putative
nr
ID XP_012076089.1
description PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
swissprot
ID Q8VC52
description RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1
trembl
ID A0A067KDZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11932 PE=4 SV=1
Gene Ontology
ID GO:0000166
description u1 small nuclear ribonucleoprotein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15379: 68033-76213 , PASA_asmbl_15381: 69971-70141 , PASA_asmbl_15382: 69285-69456
cDNA
(Sanger)
(ID:Location)		 005_K06.ab1: 70642-76205

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001668_010 0.0 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
2 Hb_001673_050 0.0554646703 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
3 Hb_134362_010 0.0597116329 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
4 Hb_005542_140 0.0617038134 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
5 Hb_000635_030 0.0635285892 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
6 Hb_027472_220 0.0733572206 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
7 Hb_000011_100 0.0740817731 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
8 Hb_029977_040 0.0744496196 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
9 Hb_001277_020 0.075113812 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
10 Hb_009252_050 0.075900359 - - protein binding protein, putative [Ricinus communis]
11 Hb_159558_010 0.0759090472 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
12 Hb_000862_040 0.0759872597 - - ara4-interacting protein, putative [Ricinus communis]
13 Hb_000710_040 0.0761582844 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
14 Hb_002217_430 0.0769318502 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
15 Hb_000809_170 0.0772690056 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
16 Hb_000614_210 0.0784741745 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
17 Hb_011849_040 0.0787316943 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000398_080 0.0788692434 - - tip120, putative [Ricinus communis]
19 Hb_000099_040 0.078936262 - - unnamed protein product [Coffea canephora]
20 Hb_000479_240 0.0790231688 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001668_010 Hb_001668_010 Hb_001673_050 Hb_001673_050 Hb_001668_010--Hb_001673_050 Hb_134362_010 Hb_134362_010 Hb_001668_010--Hb_134362_010 Hb_005542_140 Hb_005542_140 Hb_001668_010--Hb_005542_140 Hb_000635_030 Hb_000635_030 Hb_001668_010--Hb_000635_030 Hb_027472_220 Hb_027472_220 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_009252_050 Hb_009252_050 Hb_134362_010--Hb_009252_050 Hb_134362_010--Hb_001673_050 Hb_134362_010--Hb_002849_170 Hb_000352_070 Hb_000352_070 Hb_134362_010--Hb_000352_070 Hb_134362_010--Hb_004429_010 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_000130_020 Hb_000130_020 Hb_000635_030--Hb_000130_020 Hb_141069_010 Hb_141069_010 Hb_000635_030--Hb_141069_010 Hb_000120_280 Hb_000120_280 Hb_000635_030--Hb_000120_280 Hb_002259_080 Hb_002259_080 Hb_000635_030--Hb_002259_080 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1235 31.2625 18.4734 20.6438 26.915 17.1173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9622 12.9689 10.9592 25.3914 20.2108

CAGE analysis