Hb_000130_020

Information

Type -
Description -
Location Contig130: 6191-11941
Sequence    

Annotation

kegg
ID rcu:RCOM_0551460
description Phosphoenolpyruvate carboxylase, putative (EC:1.3.1.74)
nr
ID XP_002530381.1
description Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
swissprot
ID Q9FV65
description Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1
trembl
ID B9SWL2
description Phosphoenolpyruvate carboxylase, putative OS=Ricinus communis GN=RCOM_0551460 PE=3 SV=1
Gene Ontology
ID GO:0008964
description phosphoenolpyruvate housekeeping isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08864: 7762-8135 , PASA_asmbl_08865: 7215-8845 , PASA_asmbl_08866: 9568-9921 , PASA_asmbl_08867: 9922-11912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_020 0.0 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
2 Hb_000635_030 0.0519722529 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
3 Hb_178968_050 0.0718968239 - - PREDICTED: probable serine incorporator [Jatropha curcas]
4 Hb_000120_280 0.0742270171 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_140049_080 0.0746130247 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
6 Hb_001318_020 0.0754810259 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
7 Hb_141069_010 0.0783214502 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000365_030 0.078921053 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
9 Hb_004109_370 0.0793742511 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_002259_080 0.0814143602 - - protein transport protein sec23, putative [Ricinus communis]
11 Hb_133702_030 0.0821231174 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
12 Hb_000608_230 0.0831149047 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
13 Hb_000182_040 0.0879160856 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
14 Hb_002686_040 0.0898187516 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
15 Hb_001141_310 0.0903230275 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
16 Hb_004267_040 0.0910690803 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
17 Hb_039946_050 0.0910810585 - - catalytic, putative [Ricinus communis]
18 Hb_116349_070 0.0912293151 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
19 Hb_001377_160 0.0916266477 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
20 Hb_000243_300 0.0919654335 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000130_020 Hb_000130_020 Hb_000635_030 Hb_000635_030 Hb_000130_020--Hb_000635_030 Hb_178968_050 Hb_178968_050 Hb_000130_020--Hb_178968_050 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_141069_010 Hb_141069_010 Hb_000130_020--Hb_141069_010 Hb_000635_030--Hb_141069_010 Hb_001668_010 Hb_001668_010 Hb_000635_030--Hb_001668_010 Hb_000635_030--Hb_000120_280 Hb_002259_080 Hb_002259_080 Hb_000635_030--Hb_002259_080 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_178968_050--Hb_140049_080 Hb_000365_030 Hb_000365_030 Hb_178968_050--Hb_000365_030 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_004109_370 Hb_004109_370 Hb_178968_050--Hb_004109_370 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_140049_080--Hb_001318_020 Hb_001318_020--Hb_009615_170 Hb_001318_020--Hb_006355_090 Hb_001377_160 Hb_001377_160 Hb_001318_020--Hb_001377_160 Hb_001318_020--Hb_061878_010 Hb_000243_300 Hb_000243_300 Hb_141069_010--Hb_000243_300 Hb_000258_110 Hb_000258_110 Hb_141069_010--Hb_000258_110 Hb_141069_010--Hb_002259_080 Hb_039946_050 Hb_039946_050 Hb_141069_010--Hb_039946_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.969 34.392 25.8578 37.603 40.6798 24.7915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1647 11.8286 18.6725 45.8775 20.3176

CAGE analysis