Hb_039946_050

Information

Type -
Description -
Location Contig39946: 27001-33376
Sequence    

Annotation

kegg
ID rcu:RCOM_1050610
description catalytic, putative
nr
ID XP_002514248.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID B9RKK4
description Catalytic, putative OS=Ricinus communis GN=RCOM_1050610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39793: 26997-33368 , PASA_asmbl_39794: 31648-32430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039946_050 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_005663_110 0.0681702119 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
3 Hb_041327_010 0.0735589172 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
4 Hb_179306_020 0.07569831 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
5 Hb_000099_030 0.0767487634 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
6 Hb_000069_120 0.0779612927 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
7 Hb_000537_050 0.0792855424 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
8 Hb_000836_460 0.0794009344 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
9 Hb_141069_010 0.0797885306 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012286_040 0.0798781694 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
11 Hb_000243_300 0.0816639172 - - catalytic, putative [Ricinus communis]
12 Hb_001105_160 0.0817589903 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
13 Hb_004586_220 0.081827715 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
14 Hb_000981_030 0.0820989567 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
15 Hb_001442_060 0.0830686708 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
16 Hb_001258_110 0.0838421809 - - transporter, putative [Ricinus communis]
17 Hb_005333_050 0.0843171153 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
18 Hb_000230_260 0.0845934466 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
19 Hb_002284_250 0.0846128253 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
20 Hb_003912_070 0.085173804 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]

Gene co-expression network

sample Hb_039946_050 Hb_039946_050 Hb_005663_110 Hb_005663_110 Hb_039946_050--Hb_005663_110 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_179306_020 Hb_179306_020 Hb_039946_050--Hb_179306_020 Hb_000099_030 Hb_000099_030 Hb_039946_050--Hb_000099_030 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_041327_010--Hb_000069_120 Hb_041327_010--Hb_000537_050 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_002968_080 Hb_002968_080 Hb_179306_020--Hb_002968_080 Hb_179306_020--Hb_005663_110 Hb_003055_040 Hb_003055_040 Hb_179306_020--Hb_003055_040 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_001442_060 Hb_001442_060 Hb_000099_030--Hb_001442_060 Hb_000238_030 Hb_000238_030 Hb_000099_030--Hb_000238_030 Hb_102698_010 Hb_102698_010 Hb_000099_030--Hb_102698_010 Hb_000453_250 Hb_000453_250 Hb_000099_030--Hb_000453_250 Hb_000001_170 Hb_000001_170 Hb_000099_030--Hb_000001_170 Hb_000069_120--Hb_000230_260 Hb_071130_010 Hb_071130_010 Hb_000069_120--Hb_071130_010 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_000069_120--Hb_002639_080 Hb_000069_120--Hb_000537_050 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.49283 11.63 6.51138 12.044 9.39418 9.36436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.34832 4.77885 6.01577 17.2625 9.52407

CAGE analysis