Hb_041327_010

Information

Type -
Description -
Location Contig41327: 9936-31381
Sequence    

Annotation

kegg
ID rcu:RCOM_1537410
description lupus la ribonucleoprotein, putative
nr
ID XP_012074770.1
description PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
swissprot
ID Q940X9
description La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1
trembl
ID A0A067LMG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14912 PE=4 SV=1
Gene Ontology
ID GO:0019013
description la-related protein 1a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40957: 10021-31305 , PASA_asmbl_40960: 28434-28643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041327_010 0.0 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
2 Hb_002639_080 0.0550412216 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
3 Hb_012286_040 0.0578915572 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
4 Hb_000261_480 0.0582591124 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
5 Hb_000230_260 0.0590361267 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
6 Hb_000069_120 0.060001994 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
7 Hb_000537_050 0.0654627145 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
8 Hb_000003_100 0.0658301423 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
9 Hb_071130_010 0.0662128287 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
10 Hb_003060_060 0.0683026462 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
11 Hb_000037_220 0.0701289807 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
12 Hb_085781_020 0.0704668755 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
13 Hb_001341_180 0.0715391139 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
14 Hb_140049_080 0.0717346154 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
15 Hb_012092_060 0.0731350914 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
16 Hb_039946_050 0.0735589172 - - catalytic, putative [Ricinus communis]
17 Hb_004411_030 0.0750005963 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
18 Hb_004048_120 0.0755273171 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
19 Hb_001188_020 0.0761724983 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
20 Hb_000556_220 0.0763191435 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_041327_010 Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_000003_100 Hb_000003_100 Hb_012286_040--Hb_000003_100 Hb_002890_130 Hb_002890_130 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_011819_020 Hb_011819_020 Hb_000261_480--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_000261_480--Hb_002890_130 Hb_003280_020 Hb_003280_020 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_000230_260--Hb_071130_010 Hb_000230_260--Hb_000069_120 Hb_003060_060 Hb_003060_060 Hb_000230_260--Hb_003060_060 Hb_085781_020 Hb_085781_020 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_000069_120--Hb_071130_010 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_000069_120--Hb_000537_050 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_000537_050--Hb_002890_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0051 29.4715 16.3488 25.5215 22.5466 25.948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5034 10.7615 19.1538 40.3309 24.7309

CAGE analysis