Hb_007632_010

Information

Type -
Description -
Location Contig7632: 6076-21979
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09640g
description hypothetical protein
nr
ID XP_012071060.1
description PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
swissprot
ID Q8GY23
description E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3
trembl
ID U5G1U7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s09640g PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57329: 6024-19575 , PASA_asmbl_57330: 6324-19575 , PASA_asmbl_57331: 7362-7660 , PASA_asmbl_57333: 19952-20579 , PASA_asmbl_57334: 19952-21772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
2 Hb_002639_080 0.0656161673 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
3 Hb_000720_130 0.0692315021 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
4 Hb_000574_530 0.0707016349 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
5 Hb_007576_210 0.0708788087 - - PREDICTED: protein furry homolog [Jatropha curcas]
6 Hb_009486_170 0.0714203151 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
7 Hb_002333_050 0.0754118081 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
8 Hb_001124_050 0.0755110148 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
9 Hb_002909_120 0.0783969138 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
10 Hb_000340_490 0.0821902125 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
11 Hb_002521_020 0.0825760896 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
12 Hb_001963_100 0.083473612 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
13 Hb_001628_070 0.0837866868 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000412_010 0.0838694418 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_001188_020 0.0844432484 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
16 Hb_006531_020 0.0847932403 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
17 Hb_041327_010 0.0870564735 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
18 Hb_009486_090 0.0881125963 - - RNA binding protein, putative [Ricinus communis]
19 Hb_071130_010 0.0885090883 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_010809_010 0.0891173938 - - Na+/H+ antiporter [Populus euphratica]

Gene co-expression network

sample Hb_007632_010 Hb_007632_010 Hb_002639_080 Hb_002639_080 Hb_007632_010--Hb_002639_080 Hb_000720_130 Hb_000720_130 Hb_007632_010--Hb_000720_130 Hb_000574_530 Hb_000574_530 Hb_007632_010--Hb_000574_530 Hb_007576_210 Hb_007576_210 Hb_007632_010--Hb_007576_210 Hb_009486_170 Hb_009486_170 Hb_007632_010--Hb_009486_170 Hb_002333_050 Hb_002333_050 Hb_007632_010--Hb_002333_050 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_000215_140 Hb_000215_140 Hb_000720_130--Hb_000215_140 Hb_007818_010 Hb_007818_010 Hb_000720_130--Hb_007818_010 Hb_000412_010 Hb_000412_010 Hb_000720_130--Hb_000412_010 Hb_140627_020 Hb_140627_020 Hb_000720_130--Hb_140627_020 Hb_002909_120 Hb_002909_120 Hb_000720_130--Hb_002909_120 Hb_001124_050 Hb_001124_050 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_009486_090 Hb_009486_090 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020 Hb_007576_210--Hb_009486_170 Hb_014497_020 Hb_014497_020 Hb_007576_210--Hb_014497_020 Hb_001699_280 Hb_001699_280 Hb_007576_210--Hb_001699_280 Hb_007576_210--Hb_002333_050 Hb_003211_040 Hb_003211_040 Hb_007576_210--Hb_003211_040 Hb_001133_030 Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_188063_010 Hb_188063_010 Hb_002333_050--Hb_188063_010 Hb_002333_050--Hb_002909_120 Hb_000025_710 Hb_000025_710 Hb_002333_050--Hb_000025_710 Hb_002333_050--Hb_001699_280 Hb_002333_050--Hb_000665_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69942 20.9192 5.88093 13.685 14.7082 11.9141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53616 5.7889 10.6729 21.8801 20.0368

CAGE analysis