Hb_007818_010

Information

Type -
Description -
Location Contig7818: 10630-14117
Sequence    

Annotation

kegg
ID tcc:TCM_001475
description SEUSS transcriptional co-regulator isoform 1
nr
ID XP_012489360.1
description PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
swissprot
ID Q8W234
description Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1
trembl
ID A0A0D2P419
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G065800 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcriptional corepressor seuss-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57996: 10764-12000 , PASA_asmbl_57997: 12236-12491 , PASA_asmbl_57998: 12613-13399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007818_010 0.0 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
2 Hb_001227_080 0.0536901622 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002639_080 0.0706765669 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
4 Hb_019337_020 0.0715834891 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
5 Hb_071130_010 0.0733678486 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
6 Hb_000720_130 0.0758936876 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
7 Hb_001188_020 0.0776639715 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
8 Hb_000412_010 0.0815136721 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_003060_060 0.0858348306 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
10 Hb_002170_050 0.0860990453 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
11 Hb_085781_020 0.0910515537 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
12 Hb_003411_040 0.093838171 - - unnamed protein product [Coffea canephora]
13 Hb_005186_040 0.0939552852 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_000672_040 0.0944359054 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
15 Hb_004182_050 0.0954581745 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
16 Hb_001341_180 0.095550448 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
17 Hb_127743_010 0.0969939461 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
18 Hb_005656_040 0.0978457203 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000069_120 0.0982903449 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
20 Hb_000230_260 0.0991892166 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]

Gene co-expression network

sample Hb_007818_010 Hb_007818_010 Hb_001227_080 Hb_001227_080 Hb_007818_010--Hb_001227_080 Hb_002639_080 Hb_002639_080 Hb_007818_010--Hb_002639_080 Hb_019337_020 Hb_019337_020 Hb_007818_010--Hb_019337_020 Hb_071130_010 Hb_071130_010 Hb_007818_010--Hb_071130_010 Hb_000720_130 Hb_000720_130 Hb_007818_010--Hb_000720_130 Hb_001188_020 Hb_001188_020 Hb_007818_010--Hb_001188_020 Hb_001227_080--Hb_019337_020 Hb_000672_040 Hb_000672_040 Hb_001227_080--Hb_000672_040 Hb_001227_080--Hb_002639_080 Hb_001417_030 Hb_001417_030 Hb_001227_080--Hb_001417_030 Hb_000388_090 Hb_000388_090 Hb_001227_080--Hb_000388_090 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_000358_050 Hb_000358_050 Hb_019337_020--Hb_000358_050 Hb_009296_040 Hb_009296_040 Hb_019337_020--Hb_009296_040 Hb_019337_020--Hb_002639_080 Hb_019337_020--Hb_000388_090 Hb_000230_260 Hb_000230_260 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_000069_120 Hb_071130_010--Hb_001188_020 Hb_071130_010--Hb_041327_010 Hb_000720_130--Hb_007632_010 Hb_000215_140 Hb_000215_140 Hb_000720_130--Hb_000215_140 Hb_000412_010 Hb_000412_010 Hb_000720_130--Hb_000412_010 Hb_140627_020 Hb_140627_020 Hb_000720_130--Hb_140627_020 Hb_002909_120 Hb_002909_120 Hb_000720_130--Hb_002909_120 Hb_005656_040 Hb_005656_040 Hb_001188_020--Hb_005656_040 Hb_043362_010 Hb_043362_010 Hb_001188_020--Hb_043362_010 Hb_007994_010 Hb_007994_010 Hb_001188_020--Hb_007994_010 Hb_000537_050 Hb_000537_050 Hb_001188_020--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.724666 2.00396 0.692717 1.19004 1.55094 1.99688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.748272 1.23336 1.36287 2.24152 2.15869

CAGE analysis