Hb_001227_080

Information

Type -
Description -
Location Contig1227: 135572-138046
Sequence    

Annotation

kegg
ID rcu:RCOM_0382000
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002528578.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FMQ1
description Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1
trembl
ID B9SRF9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0382000 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06906: 137563-138143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_080 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_019337_020 0.0478641654 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
3 Hb_007818_010 0.0536901622 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
4 Hb_000672_040 0.0708802303 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
5 Hb_002639_080 0.0806389026 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
6 Hb_001417_030 0.0820646913 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
7 Hb_000388_090 0.0820955963 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
8 Hb_001008_120 0.08338663 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
9 Hb_000028_390 0.0863343291 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
10 Hb_007441_160 0.0880145962 - - RNA binding protein, putative [Ricinus communis]
11 Hb_004182_050 0.0888950231 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
12 Hb_003411_040 0.0889891435 - - unnamed protein product [Coffea canephora]
13 Hb_001188_020 0.0894318602 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
14 Hb_071130_010 0.089794178 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_005736_020 0.0915024405 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
16 Hb_135572_010 0.0919929411 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
17 Hb_004449_080 0.0927612735 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
18 Hb_000106_120 0.0931210135 - - hypothetical protein glysoja_007050 [Glycine soja]
19 Hb_005186_040 0.0931829692 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
20 Hb_004143_160 0.0932554602 - - SAB, putative [Ricinus communis]

Gene co-expression network

sample Hb_001227_080 Hb_001227_080 Hb_019337_020 Hb_019337_020 Hb_001227_080--Hb_019337_020 Hb_007818_010 Hb_007818_010 Hb_001227_080--Hb_007818_010 Hb_000672_040 Hb_000672_040 Hb_001227_080--Hb_000672_040 Hb_002639_080 Hb_002639_080 Hb_001227_080--Hb_002639_080 Hb_001417_030 Hb_001417_030 Hb_001227_080--Hb_001417_030 Hb_000388_090 Hb_000388_090 Hb_001227_080--Hb_000388_090 Hb_000358_050 Hb_000358_050 Hb_019337_020--Hb_000358_050 Hb_019337_020--Hb_007818_010 Hb_009296_040 Hb_009296_040 Hb_019337_020--Hb_009296_040 Hb_019337_020--Hb_002639_080 Hb_019337_020--Hb_000388_090 Hb_007818_010--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_007818_010--Hb_071130_010 Hb_000720_130 Hb_000720_130 Hb_007818_010--Hb_000720_130 Hb_001188_020 Hb_001188_020 Hb_007818_010--Hb_001188_020 Hb_005186_040 Hb_005186_040 Hb_000672_040--Hb_005186_040 Hb_007441_160 Hb_007441_160 Hb_000672_040--Hb_007441_160 Hb_005736_020 Hb_005736_020 Hb_000672_040--Hb_005736_020 Hb_011671_410 Hb_011671_410 Hb_000672_040--Hb_011671_410 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_000111_290 Hb_000111_290 Hb_001417_030--Hb_000111_290 Hb_003913_070 Hb_003913_070 Hb_001417_030--Hb_003913_070 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_003411_040 Hb_003411_040 Hb_001417_030--Hb_003411_040 Hb_000614_240 Hb_000614_240 Hb_001417_030--Hb_000614_240 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60567 4.97174 1.91954 2.98106 3.75459 5.26064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66149 3.35929 4.42028 6.08989 6.92982

CAGE analysis