Hb_000720_130

Information

Type -
Description -
Location Contig720: 160695-166322
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012392mg
description hypothetical protein
nr
ID XP_007209689.1
description hypothetical protein PRUPE_ppa012392mg [Prunus persica]
swissprot
ID Q9LTJ1
description Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1
trembl
ID M5WNM9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012392mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 13 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55636: 159643-160009 , PASA_asmbl_55637: 160844-181922 , PASA_asmbl_55638: 164889-165138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_130 0.0 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
2 Hb_007632_010 0.0692315021 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
3 Hb_000215_140 0.0752865699 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
4 Hb_007818_010 0.0758936876 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
5 Hb_000412_010 0.0785030351 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_140627_020 0.079395004 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
7 Hb_002909_120 0.0854637941 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
8 Hb_071130_010 0.0864404319 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
9 Hb_001963_100 0.0870215198 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
10 Hb_001188_020 0.088096685 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
11 Hb_008053_040 0.088680061 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
12 Hb_002639_080 0.0893566707 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
13 Hb_010180_060 0.0903183717 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
14 Hb_005656_040 0.0912528152 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000174_290 0.091608367 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
16 Hb_002333_050 0.0943899317 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
17 Hb_002521_020 0.0954853079 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
18 Hb_005186_040 0.0955830517 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
19 Hb_009486_170 0.0970120042 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
20 Hb_004019_120 0.0972783503 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000720_130 Hb_000720_130 Hb_007632_010 Hb_007632_010 Hb_000720_130--Hb_007632_010 Hb_000215_140 Hb_000215_140 Hb_000720_130--Hb_000215_140 Hb_007818_010 Hb_007818_010 Hb_000720_130--Hb_007818_010 Hb_000412_010 Hb_000412_010 Hb_000720_130--Hb_000412_010 Hb_140627_020 Hb_140627_020 Hb_000720_130--Hb_140627_020 Hb_002909_120 Hb_002909_120 Hb_000720_130--Hb_002909_120 Hb_002639_080 Hb_002639_080 Hb_007632_010--Hb_002639_080 Hb_000574_530 Hb_000574_530 Hb_007632_010--Hb_000574_530 Hb_007576_210 Hb_007576_210 Hb_007632_010--Hb_007576_210 Hb_009486_170 Hb_009486_170 Hb_007632_010--Hb_009486_170 Hb_002333_050 Hb_002333_050 Hb_007632_010--Hb_002333_050 Hb_012490_090 Hb_012490_090 Hb_000215_140--Hb_012490_090 Hb_000215_140--Hb_000412_010 Hb_000313_120 Hb_000313_120 Hb_000215_140--Hb_000313_120 Hb_000230_260 Hb_000230_260 Hb_000215_140--Hb_000230_260 Hb_001963_100 Hb_001963_100 Hb_000215_140--Hb_001963_100 Hb_001227_080 Hb_001227_080 Hb_007818_010--Hb_001227_080 Hb_007818_010--Hb_002639_080 Hb_019337_020 Hb_019337_020 Hb_007818_010--Hb_019337_020 Hb_071130_010 Hb_071130_010 Hb_007818_010--Hb_071130_010 Hb_001188_020 Hb_001188_020 Hb_007818_010--Hb_001188_020 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070 Hb_000412_010--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_140627_020--Hb_000556_220 Hb_002235_200 Hb_002235_200 Hb_140627_020--Hb_002235_200 Hb_002311_100 Hb_002311_100 Hb_140627_020--Hb_002311_100 Hb_013358_010 Hb_013358_010 Hb_140627_020--Hb_013358_010 Hb_005656_040 Hb_005656_040 Hb_140627_020--Hb_005656_040 Hb_002909_120--Hb_002333_050 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64854 4.88063 1.35091 3.36065 4.03473 3.51052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16825 1.98941 3.35758 4.16739 4.9055

CAGE analysis